Basic Information
Locus ID:
Zosma01g23410.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
SPA1-related
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 28940930 | 28943351 | - | Zosma01g23410.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.42 | 81,633.09 Da | 52.48 | 78.65 | -0.35 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 416 | 722 | 2.46602E-40 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 592 | 623 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 508 | 540 | 2.0E-5 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 417 | 443 | 0.021 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 415 | 722 | 8.4E-54 | IPR036322 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 62 | 270 | 1.83E-18 | IPR011009 |
| Gene3D | G3DSA:2.130.10.10 | - | 390 | 726 | 8.0E-115 | IPR015943 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 62 | 278 | 2.2E-21 | - |
| SMART | SM00320 | WD40_4 | 689 | 724 | 17.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 2.7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 500 | 540 | 1.6E-8 | IPR001680 |
| SMART | SM00220 | serkin_6 | 8 | 264 | 0.002 | IPR000719 |
| SMART | SM00320 | WD40_4 | 543 | 582 | 0.0085 | IPR001680 |
| SMART | SM00320 | WD40_4 | 406 | 444 | 0.039 | IPR001680 |
| SMART | SM00320 | WD40_4 | 635 | 674 | 3.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 586 | 624 | 1.4E-4 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 593 | 627 | 10.047417 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 507 | 542 | 10.521959 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 593 | 633 | 12.480124 | IPR001680 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 264 | 13.107179 | IPR000719 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 507 | 549 | 13.148488 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 527 | 541 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 611 | 625 | - | IPR019775 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 484 | 498 | 3.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 527 | 541 | 3.8E-7 | IPR020472 |
| PRINTS | PR00320 | G protein beta WD-40 repeat signature | 611 | 625 | 3.8E-7 | IPR020472 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 17 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 50 | - | - |
| Coils | Coil | Coil | 301 | 321 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G15354.3 | - | 0 |
| RefSeq | XP_010260211.1 | PREDICTED: protein SPA1-RELATED 3-like isoform X2 [Nelumbo nucifera] | 0 |
| Q9LJR3 | Protein SPA1-RELATED 3 OS=Arabidopsis thaliana OX=3702 GN=SPA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9NQ33 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology