Basic Information
Locus ID:
Zosma01g21400.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
ubiquitin-protein transferase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 26642137 | 26643366 | + | Zosma01g21400.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.10 | 44,977.32 Da | 34.09 | 103.01 | 0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 12 | 54 | 6.16238E-19 | - |
| Pfam | PF04564 | U-box domain | 8 | 81 | 5.7E-19 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 204 | 362 | 1.15E-9 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 4 | 81 | 6.06E-25 | - |
| Gene3D | G3DSA:1.25.10.10 | - | 210 | 384 | 1.2E-8 | IPR011989 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 2 | 86 | 5.9E-25 | IPR013083 |
| SMART | SM00504 | Ubox_2 | 11 | 76 | 4.2E-25 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 7 | 83 | 32.067429 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G35930.1 | plant U-box 23. Encodes a cytoplasmically localized U-box domain containing E3 ubiquitin ligase that is involved in the response to water stress and acts as a negative regulator of PAMP-triggered immunity. | 0 |
| RefSeq | XP_010934556.1 | E3 ubiquitin-protein ligase PUB23-like [Elaeis guineensis] | 0 |
| Q84TG3 | E3 ubiquitin-protein ligase PUB23 OS=Arabidopsis thaliana OX=3702 GN=PUB23 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P1P7 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology