Basic Information
Locus ID:
Zosma01g20380.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
RING finger and CHY zinc finger domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 25473569 | 25478208 | + | Zosma01g20380.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.16 | 30,839.06 Da | 52.78 | 57.58 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF14599 | Zinc-ribbon | 203 | 261 | 3.6E-27 | IPR039512 |
| Pfam | PF05495 | CHY zinc finger | 27 | 101 | 4.8E-20 | IPR008913 |
| Pfam | PF13639 | Ring finger domain | 155 | 198 | 8.0E-8 | IPR001841 |
| SUPERFAMILY | SSF161245 | Zinc hairpin stack | 92 | 149 | 7.45E-20 | IPR037275 |
| SUPERFAMILY | SSF57850 | RING/U-box | 155 | 208 | 9.84E-12 | - |
| SUPERFAMILY | SSF161219 | CHY zinc finger-like | 24 | 90 | 1.22E-17 | IPR037274 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 140 | 214 | 8.7E-12 | IPR013083 |
| Gene3D | G3DSA:2.20.28.10 | - | 227 | 268 | 4.8E-19 | - |
| SMART | SM00184 | ring_2 | 156 | 198 | 6.0E-6 | IPR001841 |
| ProSiteProfiles | PS51270 | Zinc finger CTCHY-type profile. | 91 | 155 | 33.342045 | IPR017921 |
| ProSiteProfiles | PS51266 | Zinc finger CHY-type profile. | 20 | 89 | 24.626476 | IPR008913 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 156 | 199 | 11.751628 | IPR001841 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G18650.1 | CHY-type/CTCHY-type/RING-type Zinc finger protein. | 0 |
| RefSeq | XP_010938707.1 | E3 ubiquitin-protein ligase MIEL1 [Elaeis guineensis] | 0 |
| Q8VZK0 | E3 ubiquitin-protein ligase MIEL1 OS=Arabidopsis thaliana OX=3702 GN=MIEL1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PMQ1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology