Basic Information
Locus ID:
Zosma01g15930.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 19241567 | 19244068 | - | Zosma01g15930.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.63 | 60,557.30 Da | 54.46 | 62.61 | -0.53 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 168 | 220 | 7.7147E-25 | - |
| Pfam | PF12315 | Protein DA1 | 317 | 536 | 6.5E-103 | IPR022087 |
| Pfam | PF00412 | LIM domain | 168 | 222 | 7.7E-9 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 162 | 193 | 6.83E-7 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 194 | 249 | 2.68E-5 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 163 | 227 | 2.9E-13 | - |
| SMART | SM00132 | lim_4 | 167 | 219 | 7.7E-10 | IPR001781 |
| SMART | SM00726 | uim | 130 | 149 | 27.0 | IPR003903 |
| SMART | SM00726 | uim | 104 | 123 | 1.4 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 166 | 226 | 11.7316 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 168 | 202 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 487 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 457 | 484 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G39830.3 | - | 0 |
| RefSeq | XP_020086974.1 | protein DA1-related 2 isoform X1 [Ananas comosus] | 0 |
| Q10NJ6 | LIM domain-containing protein HDR3 OS=Oryza sativa subsp. japonica OX=39947 GN=HDR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PMN0 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology