Basic Information
Locus ID:
Zosma01g15280.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase RING1-like
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 16457482 | 16458414 | - | Zosma01g15280.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.78 | 32,178.64 Da | 65.49 | 59.51 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16667 | RING-H2_RNF126_like | 187 | 229 | 3.56018E-25 | - |
| Pfam | PF14369 | zinc-ribbon | 19 | 52 | 1.7E-8 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 187 | 229 | 5.0E-14 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 181 | 235 | 3.3E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 235 | 4.5E-24 | IPR013083 |
| SMART | SM00184 | ring_2 | 188 | 228 | 4.3E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 188 | 229 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 242 | 257 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 102 | 125 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 270 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G60360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_009409315.1 | PREDICTED: probable E3 ubiquitin-protein ligase RHC1A isoform X2 [Musa acuminata subsp. malaccensis] | 0 |
| Q8LPN7 | E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana OX=3702 GN=At3g19950 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9Q6D7 | RING-type E3 ubiquitin transferase OS=Zostera marina OX=29655 GN=ZOSMA_102G00250 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology