Basic Information
Locus ID:
Zosma01g15140.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 16275071 | 16275529 | + | Zosma01g15140.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 17,006.12 Da | 35.38 | 61.58 | -0.65 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 89 | 150 | 7.08654E-17 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 21 | 81 | 1.1E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 87 | 150 | 3.2E-13 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 10 | 150 | 5.96E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 19 | 85 | 5.4E-19 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 86 | 152 | 3.0E-22 | - |
| SMART | SM00054 | efh_1 | 56 | 84 | 3.0E-4 | IPR002048 |
| SMART | SM00054 | efh_1 | 89 | 117 | 2.5E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 125 | 152 | 0.029 | IPR002048 |
| SMART | SM00054 | efh_1 | 20 | 48 | 6.1E-5 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 52 | 82 | 9.296966 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 121 | 152 | 10.747526 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 16 | 51 | 13.899706 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 85 | 120 | 15.88028 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 29 | 41 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 98 | 110 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 134 | 146 | - | IPR018247 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37770.1 | EF hand calcium-binding protein family. Encodes a protein with 40% similarity to calmodulin. Binds Ca(2+) and, as a consequence, undergoes conformational changes. CML24 expression occurs in all major organs, and transcript levels are increased from 2- to 15-fold in plants subjected to touch, darkness, heat, cold, hydrogen peroxide, abscisic acid (ABA), and indole-3-acetic acid. However, CML24 protein accumulation changes were not detectable. The putative CML24 regulatory region confers reporter expression at sites of predicted mechanical stress; in regions undergoing growth; in vascular tissues and various floral organs; and in stomata, trichomes, and hydathodes. CML24-underexpressing transgenics are resistant to ABA inhibition of germination and seedling growth, are defective in long-day induction of flowering, and have enhanced tolerance to CoCl(2), molybdic acid, ZnSO(4), and MgCl(2). Also regulates nitric oxide levels. | 0 |
| RefSeq | XP_049375133.1 | probable calcium-binding protein CML23 [Solanum verrucosum] | 0 |
| Q0DJV6 | Probable calcium-binding protein CML18 OS=Oryza sativa subsp. japonica OX=39947 GN=CML18 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q5D6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology