Basic Information
Locus ID:
Zosma01g13700.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
TIR1
Description:
Protein TRANSPORT INHIBITOR RESPONSE
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 12652099 | 12654878 | - | Zosma01g13700.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.39 | 65,056.80 Da | 39.35 | 98.14 | 0.07 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF18511 | F-box | 10 | 49 | 1.0E-15 | IPR041567 |
| Pfam | PF18791 | Transport inhibitor response 1 protein domain | 68 | 114 | 2.3E-21 | IPR041101 |
| SUPERFAMILY | SSF81383 | F-box domain | 8 | 78 | 1.27E-6 | IPR036047 |
| SUPERFAMILY | SSF52047 | RNI-like | 74 | 537 | 2.88E-28 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 48 | 581 | 4.1E-163 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 7 | 47 | 6.3E-16 | - |
| SMART | SM00367 | LRR_CC_2 | 434 | 457 | 87.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 106 | 130 | 76.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 483 | 507 | 90.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 374 | 398 | 13.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 131 | 156 | 60.0 | IPR006553 |
| SMART | SM00256 | fbox_2 | 11 | 52 | 2.3E-5 | IPR001810 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62980.1 | F-box/RNI-like superfamily protein. Encodes an auxin receptor that mediates auxin-regulated transcription. It contains leucine-rich repeats and an F-box and interacts with ASK1, ASK2 and AtCUL1 to form SCF-TIR1, an SCF ubiquitin ligase complex. Related to yeast Grr1p and human SKP2 proteins, involved in ubiquitin-mediated processes. Required for normal response to auxin and repressed in response to flagellin. As part of the SCF complex and in the presence of auxin, TIR1 interacts with Aux/IAA transcriptional repressor proteins and mediates their degradation. | 0 |
| RefSeq | XP_010941793.1 | transport inhibitor response 1-like protein Os05g0150500 [Elaeis guineensis] | 0 |
| Q570C0 | Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana OX=3702 GN=TIR1 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PHC9 | Auxin signaling F-box 2 OS=Zostera marina OX=29655 GN=ZOSMA_23G00160 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology