Basic Information
Locus ID:
Zosma01g13280.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Calcium-binding protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 12088481 | 12092008 | - | Zosma01g13280.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.88 | 21,218.69 Da | 29.45 | 71.08 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00051 | EFh | 38 | 97 | 8.47813E-9 | IPR002048 |
| CDD | cd00051 | EFh | 117 | 172 | 1.85651E-14 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 109 | 172 | 5.6E-12 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 36 | 94 | 4.5E-9 | IPR002048 |
| SUPERFAMILY | SSF47473 | EF-hand | 27 | 172 | 3.62E-36 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 103 | 181 | 6.2E-18 | - |
| Gene3D | G3DSA:1.10.238.10 | - | 1 | 102 | 2.3E-15 | - |
| SMART | SM00054 | efh_1 | 111 | 139 | 21.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 147 | 175 | 2.1E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 71 | 99 | 140.0 | IPR002048 |
| SMART | SM00054 | efh_1 | 35 | 63 | 1.9 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 107 | 142 | 9.93856 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 143 | 178 | 13.397589 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 31 | 66 | 12.839682 | IPR002048 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 44 | 56 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 120 | 132 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 156 | 168 | - | IPR018247 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G32250.1 | Calcium-binding EF-hand family protein. | 0 |
| RefSeq | XP_012070221.1 | probable calcium-binding protein CML18 [Jatropha curcas] | 0 |
| Q9LQN4 | Probable calcium-binding protein CML17 OS=Arabidopsis thaliana OX=3702 GN=CML17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9Q3Z9 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology