Basic Information
Locus ID:
Zosma01g12040.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
zinc-ribbon
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 9732923 | 9733810 | + | Zosma01g12040.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.13 | 33,161.60 Da | 69.59 | 58.85 | -0.64 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16669 | RING-H2_RNF181 | 186 | 231 | 2.20839E-21 | - |
| Pfam | PF14369 | zinc-ribbon | 6 | 38 | 4.2E-8 | IPR039525 |
| Pfam | PF13639 | Ring finger domain | 186 | 228 | 4.7E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 168 | 233 | 1.92E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 149 | 234 | 2.2E-21 | IPR013083 |
| SMART | SM00184 | ring_2 | 187 | 227 | 2.6E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 187 | 228 | 12.208971 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 251 | 265 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 240 | 265 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40830.1 | RING-H2 finger C1A. Encodes a putative RING-H2 finger protein RHC1a. | 0 |
| RefSeq | XP_042512398.1 | - | 0 |
| O22197 | Probable E3 ubiquitin-protein ligase RHC1A OS=Arabidopsis thaliana OX=3702 GN=RHC1A PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9P3D2 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology