Basic Information
Locus ID:
Zosma01g09920.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Ubiquitin receptor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 7051501 | 7057741 | + | Zosma01g09920.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.50 | 43,320.40 Da | 53.89 | 87.78 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14382 | UBA2_RAD23_plant | 353 | 395 | 1.19906E-24 | - |
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 2.03972E-25 | - |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 1.2E-15 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 357 | 392 | 6.8E-12 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 275 | 331 | 9.2E-22 | IPR015360 |
| Pfam | PF00627 | UBA/TS-N domain | 177 | 212 | 1.1E-11 | IPR015940 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 271 | 337 | 1.28E-20 | IPR036353 |
| SUPERFAMILY | SSF46934 | UBA-like | 340 | 399 | 2.92E-14 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 171 | 219 | 5.11E-11 | IPR009060 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 88 | 8.98E-21 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 7.1E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 348 | 396 | 6.2E-23 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 266 | 331 | 5.1E-26 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 167 | 217 | 5.8E-20 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.2E-16 | IPR000626 |
| SMART | SM00165 | uba_6 | 174 | 214 | 0.013 | IPR015940 |
| SMART | SM00165 | uba_6 | 357 | 394 | 6.5E-9 | IPR015940 |
| SMART | SM00727 | CBM | 273 | 316 | 8.5E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 400 | 1.6E-108 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 171 | 215 | 11.82398 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 354 | 395 | 14.691536 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.257881 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 383 | 398 | 2.3E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 368 | 382 | 2.3E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 351 | 367 | 2.3E-34 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 301 | 323 | 2.3E-34 | IPR004806 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.3 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_043716365.1 | - | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9Q0P1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology