Basic Information
Locus ID:
Zosma01g09670.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
ABCC5
Description:
ABC transporter C family member
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 6823423 | 6829891 | + | Zosma01g09670.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.49 | 170,676.78 Da | 36.55 | 106.94 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18580 | ABC_6TM_ABCC_D2 | 953 | 1247 | 1.21681E-96 | IPR044726 |
| CDD | cd03244 | ABCC_MRP_domain2 | 1270 | 1490 | 1.91568E-124 | - |
| CDD | cd03250 | ABCC_MRP_domain1 | 634 | 833 | 2.44424E-102 | - |
| CDD | cd18579 | ABC_6TM_ABCC_D1 | 321 | 608 | 2.77282E-102 | IPR044746 |
| Pfam | PF00664 | ABC transporter transmembrane region | 955 | 1193 | 2.4E-28 | IPR011527 |
| Pfam | PF00005 | ABC transporter | 652 | 786 | 1.9E-18 | IPR003439 |
| Pfam | PF00005 | ABC transporter | 1289 | 1437 | 3.3E-29 | IPR003439 |
| Pfam | PF00664 | ABC transporter transmembrane region | 324 | 588 | 1.3E-28 | IPR011527 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 310 | 620 | 5.49E-38 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 629 | 856 | 5.61E-54 | IPR027417 |
| SUPERFAMILY | SSF90123 | ABC transporter transmembrane region | 952 | 1248 | 9.68E-50 | IPR036640 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 1263 | 1503 | 4.52E-68 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 913 | 1253 | 2.7E-60 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 628 | 862 | 8.6E-70 | IPR027417 |
| Gene3D | G3DSA:1.20.1560.10 | ABC transporter type 1, transmembrane domain | 292 | 616 | 7.4E-54 | IPR036640 |
| Gene3D | G3DSA:3.40.50.300 | - | 1256 | 1507 | 6.4E-81 | IPR027417 |
| SMART | SM00382 | AAA_5 | 661 | 842 | 2.4E-14 | IPR003593 |
| SMART | SM00382 | AAA_5 | 1298 | 1483 | 4.7E-14 | IPR003593 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 955 | 1225 | 35.196815 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 1272 | 1506 | 17.953979 | IPR003439 |
| ProSiteProfiles | PS50929 | ABC transporter integral membrane type-1 fused domain profile. | 323 | 600 | 38.045113 | IPR011527 |
| ProSiteProfiles | PS50893 | ATP-binding cassette, ABC transporter-type domain profile. | 634 | 857 | 22.695852 | IPR003439 |
| ProSitePatterns | PS00211 | ABC transporters family signature. | 759 | 773 | - | IPR017871 |
| Coils | Coil | Coil | 908 | 931 | - | - |
| Coils | Coil | Coil | 481 | 501 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G04120.1 | multidrug resistance-associated protein 5. encodes a high-affinity inositol hexakisphosphate transporter that plays a role in guard cell signaling and phytate storage. It is a member of MRP subfamily / ABC transporter subfamily C. | 0 |
| RefSeq | XP_010936069.1 | ABC transporter C family member 5 isoform X1 [Elaeis guineensis] | 0 |
| Q7GB25 | ABC transporter C family member 5 OS=Arabidopsis thaliana OX=3702 GN=ABCC5 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PDT4 | Multidrug resistance protein ABC transporter family OS=Zostera marina OX=29655 GN=ZOSMA_279G00070 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology