Basic Information
Locus ID:
Zosma01g08670.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Holliday junction DNA helicase ruvB N-terminus
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 5850533 | 5855218 | + | Zosma01g08670.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.94 | 105,344.14 Da | 51.59 | 83.73 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00009 | AAA | 656 | 789 | 3.23584E-24 | - |
| Pfam | PF00004 | ATPase family associated with various cellular activities (AAA) | 658 | 788 | 1.2E-37 | IPR003959 |
| Pfam | PF17862 | AAA+ lid domain | 812 | 847 | 1.2E-10 | IPR041569 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 619 | 850 | 1.69E-59 | IPR027417 |
| Gene3D | G3DSA:1.10.8.60 | - | 790 | 889 | 6.8E-95 | - |
| Gene3D | G3DSA:3.40.50.300 | - | 618 | 895 | 6.8E-95 | IPR027417 |
| SMART | SM00382 | AAA_5 | 654 | 791 | 1.2E-20 | IPR003593 |
| ProSitePatterns | PS00674 | AAA-protein family signature. | 761 | 780 | - | IPR003960 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 477 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 874 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 458 | 499 | - | - |
| Coils | Coil | Coil | 842 | 872 | - | - |
| Coils | Coil | Coil | 498 | 518 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G64110.3 | P-loop containing nucleoside triphosphate hydrolases superfamily protein. | 0 |
| RefSeq | XP_042481207.1 | - | 0 |
| Q6NW58 | Spastin OS=Danio rerio OX=7955 GN=spast PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9Q1R1 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology