Basic Information
Locus ID:
Zosma01g07670.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Leucine-rich repeats, outliers
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 5078592 | 5080541 | - | Zosma01g07670.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.43 | 70,161.00 Da | 31.05 | 105.18 | 0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13516 | Leucine Rich repeat | 616 | 638 | 0.48 | IPR001611 |
| Pfam | PF13516 | Leucine Rich repeat | 563 | 586 | 0.049 | IPR001611 |
| Pfam | PF18511 | F-box | 43 | 72 | 2.0E-8 | IPR041567 |
| Pfam | PF13516 | Leucine Rich repeat | 205 | 227 | 1.2 | IPR001611 |
| SUPERFAMILY | SSF52047 | RNI-like | 165 | 351 | 5.69E-29 | - |
| SUPERFAMILY | SSF52047 | RNI-like | 373 | 645 | 7.32E-25 | - |
| SUPERFAMILY | SSF81383 | F-box domain | 34 | 75 | 6.54E-11 | IPR036047 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 274 | 368 | 8.4E-10 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 509 | 645 | 1.2E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 451 | 508 | 2.8E-5 | IPR032675 |
| Gene3D | G3DSA:1.20.1280.50 | - | 40 | 78 | 1.9E-11 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 162 | 273 | 1.0E-23 | IPR032675 |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 369 | 447 | 5.3E-7 | IPR032675 |
| SMART | SM00367 | LRR_CC_2 | 256 | 281 | 9.5 | IPR006553 |
| SMART | SM00256 | fbox_2 | 44 | 86 | 9.7E-4 | IPR001810 |
| SMART | SM00367 | LRR_CC_2 | 230 | 255 | 6.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 590 | 615 | 45.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 204 | 229 | 0.032 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 563 | 588 | 3.3E-4 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 514 | 535 | 28.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 178 | 203 | 1.7 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 371 | 396 | 22.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 616 | 641 | 300.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 282 | 306 | 5.3 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 332 | 357 | 660.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 479 | 504 | 120.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 397 | 422 | 430.0 | IPR006553 |
| SMART | SM00367 | LRR_CC_2 | 537 | 562 | 26.0 | IPR006553 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 23 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 16 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G25350.1 | EIN3-binding F box protein 2. Arabidopsis thaliana EIN3-binding F-box protein 2 (EBF2) mRNA. Part of the SCF complex, it is located in the nucleus and is involved in the ethylene-response pathway. | 0 |
| RefSeq | XP_010264613.1 | PREDICTED: EIN3-binding F-box protein 2-like [Nelumbo nucifera] | 0 |
| Q708Y0 | EIN3-binding F-box protein 2 OS=Arabidopsis thaliana OX=3702 GN=EBF2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9PR10 | F-box family protein OS=Zostera marina OX=29655 GN=ZOSMA_17G00680 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology