Basic Information
Locus ID:
Zosma01g07240.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Short Name:
UBP16
Description:
Ubiquitin carboxyl-terminal hydrolase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 4889225 | 4894098 | - | Zosma01g07240.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.53 | 93,790.41 Da | 50.11 | 72.35 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 382 | 684 | 3.7E-45 | IPR001394 |
| Pfam | PF01753 | MYND finger | 98 | 135 | 6.6E-9 | IPR002893 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 378 | 692 | 2.94E-86 | IPR038765 |
| SUPERFAMILY | SSF144232 | HIT/MYND zinc finger-like | 95 | 137 | 1.2E-11 | - |
| Gene3D | G3DSA:6.10.140.2220 | - | 93 | 138 | 3.6E-12 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 374 | 693 | 5.7E-90 | - |
| ProSiteProfiles | PS50865 | Zinc finger MYND-type profile. | 98 | 135 | 11.758225 | IPR002893 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 381 | 687 | 50.732182 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 382 | 397 | - | IPR018200 |
| ProSitePatterns | PS01360 | Zinc finger MYND-type signature. | 98 | 135 | - | IPR002893 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 769 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 753 | 774 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G65450.1 | ubiquitin-specific protease 17. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_010942663.1 | ubiquitin carboxyl-terminal hydrolase 17 [Elaeis guineensis] | 0 |
| Q9FKP5 | Ubiquitin carboxyl-terminal hydrolase 17 OS=Arabidopsis thaliana OX=3702 GN=UBP17 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0K9PR78 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology