HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Zosma01g06190.v3.1
Species & Taxonomic ID: Zostera marina & 29655
Genome Assembly: GCA_001185155.1
Description: Aux IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations
Maps and Mapping Data
Chromosome Start End Strand ID
Chr01 3994779 3996345 - Zosma01g06190.v3.1
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
8.61 32,833.81 Da 34.28 70.19 -0.52
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF02309 AUX/IAA family 33 291 1.1E-81 IPR033389
SUPERFAMILY SSF54277 CAD & PB1 domains 183 283 2.31E-21 -
Gene3D G3DSA:3.10.20.90 - 179 294 1.5E-42 -
ProSiteProfiles PS51745 PB1 domain profile. 185 284 24.073229 IPR000270
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
KEGG Pathway
KO Term:
K14484 (auxin-responsive protein IAA)
Pathway:
ko04075 (Plant hormone signal transduction) map04075 (Plant hormone signal transduction)
Best hit
Source Best Hit ID Description E-value
TAIR AT4G29080.1 phytochrome-associated protein 2. phytochrome-associated protein 2 (PAP2) 0
RefSeq XP_008789309.1 auxin-responsive protein IAA27-like [Phoenix dactylifera] 0
Swiss-Prot Q9ZSY8 Auxin-responsive protein IAA27 OS=Arabidopsis thaliana OX=3702 GN=IAA27 PE=1 SV=1 0
TrEMBL A0A0K9PRH7 - 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 5 jg18133, jg19602, jg25321, jg30757, jg39876
Aizoaceae Mesembryanthemum crystallinum 3 gene_10727, gene_21314, gene_23662
Amaranthaceae Atriplex hortensis 4 Ah002364, Ah010889, Ah012984, Ah014582
Amaranthaceae Beta vulgaris 3 BVRB_6g152930, BVRB_8g196860, BVRB_9g221270
Amaranthaceae Salicornia bigelovii 6 Sbi_jg11365, Sbi_jg25012, Sbi_jg43022, Sbi_jg45624 ...
Sbi_jg46319, Sbi_jg8866
Amaranthaceae Salicornia europaea 3 Seu_jg11469, Seu_jg19738, Seu_jg20647
Amaranthaceae Suaeda aralocaspica 3 GOSA_00002058, GOSA_00005327, GOSA_00007773
Amaranthaceae Suaeda glauca 8 Sgl35715, Sgl41030, Sgl42253, Sgl47029, Sgl53416, Sgl55810 ...
Sgl58682, Sgl61019
Amaranthaceae Chenopodium album 9 gene:ENSEOMG00000001205, gene:ENSEOMG00000008979 ...
gene:ENSEOMG00000015656, gene:ENSEOMG00000018667, gene:ENSEOMG00000026643, gene:ENSEOMG00000034305, gene:ENSEOMG00000038377, gene:ENSEOMG00000047145, gene:ENSEOMG00000052437
Amaranthaceae Chenopodium quinoa 5 CQ.Regalona.r1.6AG0000240, CQ.Regalona.r1.6BG0000130 ...
CQ.Regalona.r1.7BG0011670, CQ.Regalona.r1.8AG0019830, CQ.Regalona.r1.8BG0022560
Anacardiaceae Pistacia vera 5 pistato.v30042400, pistato.v30124190, pistato.v30124900 ...
pistato.v30204260, pistato.v30256820
Apiaceae Apium graveolens 7 Ag10G01523, Ag4G00154, Ag4G01188, Ag6G01444, Ag8G00230 ...
Ag9G01116, AgUnG01323
Arecaceae Cocos nucifera 4 COCNU_02G003860, COCNU_03G011800, COCNU_14G003610 ...
scaffold023260G000050
Arecaceae Phoenix dactylifera 4 gene-LOC103702546, gene-LOC103706840, gene-LOC103709490 ...
gene-LOC103716613
Asparagaceae Asparagus officinalis 2 AsparagusV1_01.459.V1.1, AsparagusV1_05.1898.V1.1
Asteraceae Flaveria trinervia 9 Ftri13G12981, Ftri14G00199, Ftri15G16890, Ftri18G12429 ...
Ftri18G24814, Ftri1G31643, Ftri3G11414, Ftri7G05048, Ftri8G12102
Brassicaceae Arabidopsis thaliana 3 AT2G22670.4, AT4G29080.1, AT5G65670.1
Brassicaceae Eutrema salsugineum 3 Thhalv10000236m.g.v1.0, Thhalv10004532m.g.v1.0 ...
Thhalv10025542m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp2g28750.v2.2, Sp4g01690.v2.2, Sp7g27020.v2.2
Brassicaceae Brassica nigra 6 BniB01g021330.2N, BniB03g011460.2N, BniB04g000680.2N ...
BniB05g008450.2N, BniB06g013950.2N, BniB07g043370.2N
Casuarinaceae Casuarina equisetifolia 4 Ceq03G1029, Ceq05G0316, Ceq06G0402, Ceq06G1520
Casuarinaceae Casuarina glauca 4 Cgl03G1114, Cgl05G0335, Cgl06G0417, Cgl06G1578
Cymodoceaceae Cymodocea nodosa 3 gene.Cymno02g12310, gene.Cymno07g05240, gene.Cymno12g02610
Hydrocharitaceae Thalassia testudinum 2 gene.Thate02g25200, gene.Thate04g20560
Malvaceae Hibiscus hamabo Siebold & Zucc. 4 nbisL1-mrna-10596, nbisL1-mrna-3239, nbisL1-mrna-4377 ...
nbisL1-mrna-768
Nitrariaceae Nitraria sibirica 3 evm.TU.LG01.318, evm.TU.LG02.2645, evm.TU.LG06.266
Plantaginaceae Plantago ovata 2 Pov_00023258, Pov_00025698
Plumbaginaceae Limonium bicolor 3 Lb1G05999, Lb1G06005, Lb5G26446
Poaceae Eleusine coracana subsp. coracana 1 gene-QOZ80_1BG0049300
Poaceae Hordeum vulgare 1 HORVU.MOREX.r3.3HG0249060.1
Poaceae Lolium multiflorum 3 gene-QYE76_017236, gene-QYE76_033899, gene-QYE76_051569
Poaceae Oryza coarctata 2 Oco10G004890, Oco11G009790
Poaceae Paspalum vaginatum 1 gene-BS78_10G145100
Poaceae Puccinellia tenuiflora 1 Pt_Ctg00027
Poaceae Sporobolus alterniflorus 2 Chr14G011510, Chr21G016240
Poaceae Zea mays 1 Zm00001eb284310_P002
Poaceae Zoysia japonica 1 nbis-gene-17920
Portulacaceae Portulaca oleracea 5 evm.TU.LG07.970, evm.TU.LG08.1637, evm.TU.LG12.1720 ...
evm.TU.LG15.890, evm.TU.LG22.536
Posidoniaceae Posidonia oceanica 9 gene.Posoc02g10760, gene.Posoc02g16660, gene.Posoc02g18880 ...
gene.Posoc04g09970, gene.Posoc04g09980, gene.Posoc05g19100, gene.Posoc07g11800, gene.Posoc08g13080, gene.Posoc09g07380
Rhizophoraceae Bruguiera sexangula 7 evm.TU.57324.2, evm.TU.57325.2, evm.TU.Scaffold_7_RagTag.885 ...
evm.TU.Scaffold_18_RagTag.557, evm.TU.Scaffold_4_RagTag.1928, evm.TU.Scaffold_6_RagTag.1734, evm.TU.Scaffold_8_RagTag.847
Rhizophoraceae Carallia pectinifolia 5 nbisL1-mrna-19348, nbisL1-mrna-27935, nbisL1-mrna-27953 ...
nbisL1-mrna-818, nbisL1-mrna-9390
Rhizophoraceae Ceriops tagal 7 nbisL1-mrna-11579, nbisL1-mrna-1309, nbisL1-mrna-16303 ...
nbisL1-mrna-17067, nbisL1-mrna-17635, nbisL1-mrna-3484, nbisL1-mrna-6952
Rhizophoraceae Ceriops zippeliana 7 nbisL1-mrna-12033, nbisL1-mrna-20577, nbisL1-mrna-2409 ...
nbisL1-mrna-4698, nbisL1-mrna-6714, nbisL1-mrna-7970, nbisL1-mrna-8828
Rhizophoraceae Kandelia candel 7 evm.TU.utg000002l.682, evm.TU.utg000008l.1101 ...
evm.TU.utg000011l.1056, evm.TU.utg000018l.238, evm.TU.utg000019l.547, evm.TU.utg000023l.123, evm.TU.utg000033l.556
Rhizophoraceae Kandelia obovata 7 Maker00001192, Maker00002346, Maker00002870, Maker00007445 ...
Maker00010768, Maker00015163, Maker00019097
Rhizophoraceae Rhizophora apiculata 7 nbisL1-mrna-11484, nbisL1-mrna-13081, nbisL1-mrna-14782 ...
nbisL1-mrna-15412, nbisL1-mrna-16404, nbisL1-mrna-6168, nbisL1-mrna-7365
Rhizophoraceae Rhizophora mangle 7 nbisL1-mrna-10133, nbisL1-mrna-1212, nbisL1-mrna-17069 ...
nbisL1-mrna-17980, nbisL1-mrna-1848, nbisL1-mrna-21320, nbisL1-mrna-3351
Salicaceae Populus euphratica 3 populus_peu02716, populus_peu32158, populus_peu33622
Solanaceae Lycium barbarum 5 gene-LOC132603692, gene-LOC132604040, gene-LOC132627675 ...
gene-LOC132633374, gene-LOC132636804
Solanaceae Solanum chilense 3 SOLCI002323600, SOLCI003422200, SOLCI004345900
Solanaceae Solanum pennellii 2 gene-LOC107005226, gene-LOC107012302
Tamaricaceae Reaumuria soongarica 4 STRG.8866_chr03_-, gene_15590, gene_1813, gene_8019
Tamaricaceae Tamarix chinensis 4 TC04G2788, TC09G0281, TC10G1441, TC11G0618
Zosteraceae Zostera marina 2 Zosma01g06190.v3.1, Zosma05g13460.v3.1
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.