Basic Information
Locus ID:
Zosma01g04550.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Belongs to the FPP GGPP synthase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 2985909 | 2986964 | - | Zosma01g04550.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.28 | 37,783.80 Da | 47.27 | 90.08 | 0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00348 | Polyprenyl synthetase | 91 | 284 | 3.6E-31 | IPR000092 |
| SUPERFAMILY | SSF48576 | Terpenoid synthases | 67 | 333 | 1.73E-54 | IPR008949 |
| Gene3D | G3DSA:1.10.600.10 | Farnesyl Diphosphate Synthase | 61 | 350 | 2.7E-75 | IPR008949 |
| ProSitePatterns | PS00723 | Polyprenyl synthases signature 1. | 142 | 158 | - | IPR033749 |
| SFLD | SFLDS00005 | Isoprenoid Synthase Type I | 92 | 329 | 1.5E-38 | - |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
Module:
Reaction:
R01658 (Dimethylallyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranyl diphosphate)
R02003 (Geranyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + trans,trans-Farnesyl diphosphate)
R02061 (trans,trans-Farnesyl diphosphate + Isopentenyl diphosphate <=> Diphosphate + Geranylgeranyl diphosphate)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38460.1 | geranylgeranyl reductase. | 0 |
| RefSeq | XP_008813057.2 | heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic [Phoenix dactylifera] | 0 |
| Q39108 | Heterodimeric geranylgeranyl pyrophosphate synthase small subunit, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GGR PE=1 SV=2 | 0 | |
| TrEMBL | A0A0K9PJ01 | Heterodimeric geranyl(Geranyl)diphosphate synthase small subunit, geranyl diphosphate synthase OS=Zostera marina OX=29655 GN=ZOSMA_248G00370 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology