Basic Information
Locus ID:
Zosma01g04350.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 2915715 | 2917949 | + | Zosma01g04350.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 53,634.74 Da | 46.80 | 88.05 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00023 | Ankyrin repeat | 181 | 208 | 0.001 | IPR002110 |
| Pfam | PF00023 | Ankyrin repeat | 224 | 254 | 5.8E-8 | IPR002110 |
| Pfam | PF12796 | Ankyrin repeats (3 copies) | 83 | 139 | 1.2E-8 | IPR020683 |
| Pfam | PF00023 | Ankyrin repeat | 52 | 81 | 2.2E-4 | IPR002110 |
| SUPERFAMILY | SSF48403 | Ankyrin repeat | 20 | 276 | 7.17E-51 | IPR036770 |
| SUPERFAMILY | SSF57850 | RING/U-box | 316 | 377 | 3.85E-9 | - |
| Gene3D | G3DSA:1.25.40.20 | - | 150 | 309 | 4.3E-26 | IPR036770 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 310 | 393 | 2.0E-8 | IPR013083 |
| Gene3D | G3DSA:1.25.40.20 | - | 14 | 147 | 9.4E-30 | IPR036770 |
| SMART | SM00248 | ANK_2a | 180 | 209 | 7.7E-4 | IPR002110 |
| SMART | SM00184 | ring_2 | 322 | 370 | 0.002 | IPR001841 |
| SMART | SM00248 | ANK_2a | 223 | 252 | 2.8E-5 | IPR002110 |
| SMART | SM00248 | ANK_2a | 83 | 112 | 0.0016 | IPR002110 |
| SMART | SM00248 | ANK_2a | 50 | 79 | 1.9E-4 | IPR002110 |
| SMART | SM00248 | ANK_2a | 117 | 147 | 57.0 | IPR002110 |
| SMART | SM00248 | ANK_2a | 256 | 286 | 4200.0 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 83 | 115 | 10.4992 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 50 | 81 | 11.346704 | - |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 223 | 254 | 11.505894 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 50 | 82 | 12.60929 | IPR002110 |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 180 | 212 | 11.54089 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 180 | 205 | 11.107922 | - |
| ProSiteProfiles | PS50088 | Ankyrin repeat profile. | 223 | 255 | 12.39561 | IPR002110 |
| ProSiteProfiles | PS50297 | Ankyrin repeat region circular profile. | 83 | 114 | 9.648697 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 322 | 371 | 9.922256 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 337 | 346 | - | IPR017907 |
| PRINTS | PR01415 | Ankyrin repeat signature | 181 | 196 | 2.0E-5 | IPR002110 |
| PRINTS | PR01415 | Ankyrin repeat signature | 239 | 253 | 2.0E-5 | IPR002110 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G57740.1 | XB3 ortholog 2 in Arabidopsis thaliana. ubiquitin ligase | 0 |
| RefSeq | XP_008779779.1 | probable E3 ubiquitin-protein ligase XBOS32 isoform X2 [Phoenix dactylifera] | 0 |
| Q6KAE5 | Probable E3 ubiquitin-protein ligase XBOS32 OS=Oryza sativa subsp. japonica OX=39947 GN=XBOS32 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0K9PLX3 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology