Basic Information
Locus ID:
Zosma01g01160.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 1143440 | 1148133 | - | Zosma01g01160.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.40 | 73,863.13 Da | 46.31 | 75.18 | -0.49 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd08368 | LIM | 325 | 400 | 5.4005E-4 | - |
| CDD | cd09396 | LIM_DA1 | 298 | 350 | 2.5652E-32 | - |
| Pfam | PF14009 | Domain of unknown function (DUF4228) | 1 | 111 | 7.9E-18 | IPR025322 |
| Pfam | PF00412 | LIM domain | 298 | 352 | 3.8E-9 | IPR001781 |
| Pfam | PF12315 | Protein DA1 | 447 | 653 | 9.9E-104 | IPR022087 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 324 | 379 | 3.57E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 291 | 323 | 1.13E-7 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 294 | 357 | 1.1E-14 | - |
| SMART | SM00132 | lim_4 | 297 | 349 | 6.1E-12 | IPR001781 |
| SMART | SM00726 | uim | 182 | 201 | 3.2 | IPR003903 |
| SMART | SM00726 | uim | 258 | 277 | 0.024 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 296 | 356 | 12.0484 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 258 | 277 | 10.226663 | IPR003903 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 298 | 332 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 193 | 210 | - | - |
| Coils | Coil | Coil | 240 | 260 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_020242041.1 | protein DA1-related 1-like [Asparagus officinalis] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | A0A0K9NZP6 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology