Basic Information
Locus ID:
Zosma01g00230.v3.1
Species & Taxonomic ID:
Zostera marina & 29655
Genome Assembly:
GCA_001185155.1
Description:
E3 ubiquitin-protein ligase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Chr01 | 221164 | 239718 | + | Zosma01g00230.v3.1 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.91 | 235,563.77 Da | 42.78 | 93.97 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 1005 | 1162 | 6.0E-43 | IPR000569 |
| Pfam | PF03732 | Retrotransposon gag protein | 1276 | 1342 | 3.9E-7 | IPR005162 |
| Pfam | PF00632 | HECT-domain (ubiquitin-transferase) | 894 | 1002 | 6.8E-11 | IPR000569 |
| Pfam | PF00999 | Sodium/hydrogen exchanger family | 1373 | 1734 | 1.4E-18 | IPR006153 |
| SUPERFAMILY | SSF56204 | Hect, E3 ligase catalytic domain | 836 | 1159 | 4.84E-76 | IPR035983 |
| Gene3D | G3DSA:1.20.1530.20 | - | 1371 | 1747 | 4.9E-38 | IPR038770 |
| Gene3D | G3DSA:3.30.2410.10 | Hect, E3 ligase catalytic domain | 1040 | 1166 | 4.4E-26 | - |
| Gene3D | G3DSA:3.40.50.12370 | - | 1868 | 2058 | 1.0E-6 | - |
| Gene3D | G3DSA:3.90.1750.10 | Hect, E3 ligase catalytic domains | 791 | 1036 | 2.5E-39 | - |
| SMART | SM00119 | hect_3 | 860 | 1169 | 1.2E-32 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 1005 | 1162 | 35.176853 | IPR000569 |
| ProSiteProfiles | PS50237 | HECT domain profile. | 886 | 1000 | 14.51438 | IPR000569 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 412 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 475 | 500 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 398 | 427 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 500 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G38600.1 | HEAT repeat ;HECT-domain (ubiquitin-transferase). encodes a member of HECT ubiquitin protein ligase family that is involved in trichome cell morphogenesis. Mutants in this gene exhibit supernumerary trichome branches and increased DNA content. | 0 |
| RefSeq | XP_023897830.1 | E3 ubiquitin-protein ligase UPL3 [Quercus suber] | 0 |
| Q6WWW4 | E3 ubiquitin-protein ligase UPL3 OS=Arabidopsis thaliana OX=3702 GN=UPL3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0K9P148 | - | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology