Basic Information
Locus ID:
Zma_g9035
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
catalytic domain of ctd-like phosphatases
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 19084836 | 19093784 | - | Zma_g9035 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.03 | 85,213.66 Da | 44.92 | 84.67 | -0.27 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd07521 | HAD_FCP1-like | 270 | 376 | 1.26308E-20 | - |
| Pfam | PF00035 | Double-stranded RNA binding motif | 538 | 597 | 2.6E-7 | IPR014720 |
| Pfam | PF03031 | NLI interacting factor-like phosphatase | 276 | 388 | 3.4E-8 | IPR004274 |
| SUPERFAMILY | SSF56784 | HAD-like | 157 | 412 | 9.69E-24 | IPR036412 |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 535 | 598 | 1.33E-12 | - |
| SUPERFAMILY | SSF54768 | dsRNA-binding domain-like | 690 | 763 | 4.47E-9 | - |
| Gene3D | G3DSA:3.40.50.1000 | - | 155 | 426 | 8.9E-28 | IPR023214 |
| Gene3D | G3DSA:3.30.160.20 | - | 529 | 608 | 3.9E-10 | - |
| Gene3D | G3DSA:3.30.160.20 | - | 691 | 756 | 2.0E-6 | - |
| SMART | SM00577 | forpap2 | 219 | 395 | 6.5E-11 | IPR004274 |
| SMART | SM00358 | DRBM_3 | 534 | 598 | 5.0E-8 | IPR014720 |
| SMART | SM00358 | DRBM_3 | 684 | 754 | 0.0037 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 533 | 599 | 12.086761 | IPR014720 |
| ProSiteProfiles | PS50137 | Double stranded RNA-binding domain (dsRBD) profile. | 683 | 755 | 11.358473 | IPR014720 |
| ProSiteProfiles | PS50969 | FCP1 homology domain profile. | 160 | 408 | 17.977858 | IPR004274 |
| Coils | Coil | Coil | 580 | 607 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G01270.1 | carboxyl-terminal domain (ctd) phosphatase-like 2. Encodes CPL2, a carboxyl-terminal domain (CTD) phosphatase that dephosphorylates CTD Ser5-PO4 of the RNA polymerase II complex. Regulates plant growth, stress and auxin responses. | 0 |
| RefSeq | XP_004970633.1 | RNA polymerase II C-terminal domain phosphatase-like 2 isoform X1 [Setaria italica] | 0 |
| Q5YDB5 | RNA polymerase II C-terminal domain phosphatase-like 2 OS=Arabidopsis thaliana OX=3702 GN=CPL2 PE=1 SV=3 | 0 | |
| TrEMBL | A0A2T7DEA0 | protein-serine/threonine phosphatase OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_5G085500 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology