Basic Information
Locus ID:
Zma_g8775
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 17351063 | 17360814 | - | Zma_g8775 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.15 | 139,930.59 Da | 51.91 | 71.73 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 1060 | 1210 | 2.9275E-52 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 532 | 854 | 2.01421E-86 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 549 | 932 | 4.4E-69 | IPR000330 |
| Pfam | PF13923 | Zinc finger, C3HC4 type (RING finger) | 970 | 1007 | 5.8E-8 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 1099 | 1200 | 6.1E-15 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 863 | 1258 | 3.01E-54 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 515 | 854 | 3.42E-46 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 969 | 1014 | 6.45E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 616 | 711 | 2.0E-10 | IPR038718 |
| Gene3D | G3DSA:3.40.50.300 | - | 869 | 1262 | 5.0E-64 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 504 | 596 | 9.6E-11 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 712 | 867 | 3.1E-29 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 964 | 1054 | 1.2E-9 | IPR013083 |
| SMART | SM00490 | helicmild6 | 1117 | 1200 | 7.7E-18 | IPR001650 |
| SMART | SM00184 | ring_2 | 970 | 1008 | 4.6E-6 | IPR001841 |
| SMART | SM00487 | ultradead3 | 528 | 833 | 2.0E-29 | IPR014001 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 970 | 1009 | 10.77793 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 547 | 816 | 12.313566 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1081 | 1253 | 14.278336 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 985 | 994 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 707 | 721 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 37 | 56 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 703 | 749 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G61140.3 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_004970180.1 | helicase-like transcription factor CHR28 isoform X3 [Setaria italica] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | K3XDV6 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related OS=Setaria italica OX=4555 GN=SETIT_5G339900v2 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology