Basic Information
Locus ID:
Zma_g8731
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Zinc finger, C3HC4 type (RING finger)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 17027499 | 17028173 | - | Zma_g8731 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.18 | 23,928.95 Da | 47.11 | 77.95 | 0.00 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 27 | 71 | 1.45922E-28 | - |
| Pfam | PF13445 | RING-type zinc-finger | 29 | 67 | 1.2E-8 | IPR027370 |
| SUPERFAMILY | SSF57850 | RING/U-box | 25 | 82 | 1.14E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 21 | 83 | 1.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 29 | 69 | 8.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 29 | 70 | 13.374458 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 44 | 53 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 105 | 119 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 92 | 119 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039849217.1 | E3 ubiquitin-protein ligase RNF185-like [Panicum virgatum] | 0 |
| Q09463 | E3 ubiquitin ligase rnf-5 OS=Caenorhabditis elegans OX=6239 GN=rnf-5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0A9V7P0 | RING-type E3 ubiquitin transferase OS=Arundo donax OX=35708 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology