Basic Information
Locus ID:
Zma_g8680
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 16690288 | 16691010 | + | Zma_g8680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.31 | 24,942.25 Da | 62.87 | 91.12 | 0.06 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 116 | 159 | 7.1E-15 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 113 | 165 | 2.08E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 81 | 165 | 1.2E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 117 | 158 | 8.9E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 117 | 159 | 12.858103 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 224 | 240 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 209 | 240 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G42360.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039813388.1 | E3 ubiquitin-protein ligase ATL41-like [Panicum virgatum] | 0 |
| Q9SLC3 | E3 ubiquitin-protein ligase ATL41 OS=Arabidopsis thaliana OX=3702 GN=ATL41 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9SFL9 | RING-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_57684 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G005980, COCNU_14G003980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709527 |
| Poaceae | Echinochloa crus-galli | 3 | AH02.3292, BH02.3671, CH02.3207 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1BG0083760 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.3HG0289690.1.CDS1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_055187 |
| Poaceae | Oryza coarctata | 2 | Oco01G020540, Oco02G021080 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g55110.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G280000 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0602638 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr02G009350, Chr05G024150, Chr08G016490 |
| Poaceae | Thinopyrum elongatum | 1 | Tel3E01G479400 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC3AG043390, gene_TRIDC3AG043400 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS3A02G293400.1.cds1, TraesCS3A02G293500.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb152830_P001, Zm00001eb370730_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-11902, nbis-gene-31084 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g11169, Zma_g8680 |