Basic Information
Locus ID:
Zma_g8586
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 16012336 | 16013607 | - | Zma_g8586 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.42 | 18,123.04 Da | 38.26 | 86.05 | 0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12906 | RING-variant domain | 48 | 101 | 1.2E-8 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 45 | 104 | 5.3E-10 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 38 | 111 | 5.8E-14 | IPR013083 |
| SMART | SM00744 | ringv_2 | 47 | 102 | 1.2E-13 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 40 | 108 | 16.691534 | IPR011016 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G05830.1 | RING/FYVE/PHD zinc finger superfamily protein. | 0 |
| RefSeq | NP_001345659.1 | uncharacterized protein LOC100193426 isoform 1 [Zea mays] | 0 |
| TrEMBL | A0A5J9VHK5 | RING-CH-type domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_17076 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology