HalophFGD

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Basic Information
Locus ID: Zma_g8167
Species & Taxonomic ID: Zoysia macrostachya & 121788
Genome Assembly: GCA_049640385.1
Description: phosphatase 2A 55 kDa regulatory subunit B'
Maps and Mapping Data
Chromosome Start End Strand ID
Zma_chr05 12579064 12585039 + Zma_g8167
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
6.04 56,138.08 Da 51.77 72.83 -0.46
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF00400 WD domain, G-beta repeat 336 361 0.1 IPR001680
Pfam PF00400 WD domain, G-beta repeat 217 253 0.18 IPR001680
SUPERFAMILY SSF50978 WD40 repeat-like 49 498 1.47E-36 IPR036322
Gene3D G3DSA:2.130.10.10 - 204 500 1.5E-20 IPR015943
Gene3D G3DSA:2.130.10.10 - 46 183 5.1E-6 IPR015943
SMART SM00320 WD40_4 214 253 0.61 IPR001680
SMART SM00320 WD40_4 311 361 69.0 IPR001680
SMART SM00320 WD40_4 267 304 29.0 IPR001680
SMART SM00320 WD40_4 460 504 230.0 IPR001680
SMART SM00320 WD40_4 41 76 2.9 IPR001680
SMART SM00320 WD40_4 114 154 33.0 IPR001680
PIRSF PIRSF037309 PPA2_B55 20 505 2.4E-199 IPR000009
ProSitePatterns PS01025 Protein phosphatase 2A regulatory subunit PR55 signature 2. 223 237 - IPR018067
ProSitePatterns PS01024 Protein phosphatase 2A regulatory subunit PR55 signature 1. 114 128 - IPR018067
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 101 129 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 310 337 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 392 418 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 225 252 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 55 75 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 366 391 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 338 365 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 253 280 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 281 309 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 130 158 1.2E-155 IPR000009
PRINTS PR00600 Protein phosphatase PP2A 55kDa regulatory subunit signature 474 503 1.2E-155 IPR000009
MobiDBLite mobidb-lite consensus disorder prediction 1 28 - -
Gene Ontology
Molecular Function:
GO:0005515 (protein binding) GO:0019888 (protein phosphatase regulator activity)
Cellular Component:
GO:0000159 (protein phosphatase type 2A complex)
KEGG Pathway
KO Term:
K04354 (serine/threonine-protein phosphatase 2A regulatory subunit B)
Pathway:
ko03015 (mRNA surveillance pathway) map03015 (mRNA surveillance pathway) ko04071 (Sphingolipid signaling pathway) map04071 (Sphingolipid signaling pathway) ko04111 (Cell cycle - yeast) map04111 (Cell cycle - yeast) ko04151 (PI3K-Akt signaling pathway) map04151 (PI3K-Akt signaling pathway) ko04152 (AMPK signaling pathway) map04152 (AMPK signaling pathway) ko04390 (Hippo signaling pathway) map04390 (Hippo signaling pathway) ko04391 (Hippo signaling pathway - fly) map04391 (Hippo signaling pathway - fly)
Best hit
Source Best Hit ID Description E-value
TAIR AT1G17720.1 Protein phosphatase 2A, regulatory subunit PR55. type 2A protein serine/threonine phosphatase 55 kDa B 0
RefSeq XP_002455899.1 serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform isoform X1 [Sorghum bicolor] 0
Swiss-Prot Q39247 Serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B beta isoform OS=Arabidopsis thaliana OX=3702 GN=PP2AB2 PE=1 SV=1 0
TrEMBL C5XQ78 Serine/threonine-protein phosphatase 2A 55 kDa regulatory subunit B OS=Sorghum bicolor OX=4558 GN=SORBI_3003G209200 PE=3 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Acanthaceae Avicennia marina 4 jg13574, jg18075, jg18764, jg25258
Aizoaceae Mesembryanthemum crystallinum 2 gene_13182, gene_21265
Amaranthaceae Atriplex hortensis 2 Ah011387, Ah034602
Amaranthaceae Beta vulgaris 2 BVRB_2g033360, BVRB_9g211380
Amaranthaceae Salicornia bigelovii 2 Sbi_jg11876, Sbi_jg46797
Amaranthaceae Salicornia europaea 1 Seu_jg21101
Amaranthaceae Suaeda aralocaspica 1 GOSA_00020959
Amaranthaceae Suaeda glauca 2 Sgl80203, Sgl82652
Amaranthaceae Chenopodium album 6 gene:ENSEOMG00000016771, gene:ENSEOMG00000017072 ...
gene:ENSEOMG00000019315, gene:ENSEOMG00000037230, gene:ENSEOMG00000051526, gene:ENSEOMG00000052976
Amaranthaceae Chenopodium quinoa 4 CQ.Regalona.r1.2AG0014560, CQ.Regalona.r1.2BG0016560 ...
CQ.Regalona.r1.9AG0011190, CQ.Regalona.r1.9BG0011270
Anacardiaceae Pistacia vera 3 pistato.v30116380, pistato.v30139490, pistato.v30254480
Apiaceae Apium graveolens 5 Ag4G00186, Ag4G00187, Ag5G00697, Ag5G00891, Ag6G01410
Arecaceae Cocos nucifera 5 COCNU_02G001610, COCNU_03G014860, COCNU_05G010850 ...
COCNU_06G005110, COCNU_14G003240
Arecaceae Phoenix dactylifera 8 gene-LOC103702009, gene-LOC103703801, gene-LOC103709550 ...
gene-LOC103711232, gene-LOC103721824, gene-LOC113462214, gene-LOC120107243, gene-LOC120109337
Asparagaceae Asparagus officinalis 3 AsparagusV1_01.295.V1.1, AsparagusV1_05.2915.V1.1 ...
AsparagusV1_06.558.V1.1
Asteraceae Flaveria trinervia 8 Ftri10G25207, Ftri13G15029, Ftri18G18631, Ftri1G11803 ...
Ftri3G32009, Ftri4G06019, Ftri4G25630, Ftri8G24664
Brassicaceae Arabidopsis thaliana 2 AT1G17720.1, AT1G51690.3
Brassicaceae Eutrema salsugineum 3 Thhalv10007406m.g.v1.0, Thhalv10011420m.g.v1.0 ...
Thhalv10020527m.g.v1.0
Brassicaceae Schrenkiella parvula 3 Sp1g15810.v2.2, Sp1g38330.v2.2, Sp3g19300.v2.2
Brassicaceae Brassica nigra 8 BniB01g042070.2N, BniB03g007210.2N, BniB03g027760.2N ...
BniB04g032070.2N, BniB04g058240.2N, BniB06g029070.2N, BniB07g004100.2N, BniB07g049970.2N
Casuarinaceae Casuarina equisetifolia 4 Ceq02G0891, Ceq03G1657, Ceq03G2248, Ceq04G1961
Casuarinaceae Casuarina glauca 3 Cgl02G0904, Cgl03G2385, Cgl04G2148
Cymodoceaceae Cymodocea nodosa 4 gene.Cymno01g11750, gene.Cymno06g05450, gene.Cymno12g02800 ...
gene.Cymno16g03380
Dunaliellaceae Dunaliella salina 1 Dusal.0038s00001.v1.0
Hydrocharitaceae Thalassia testudinum 3 gene.Thate02g34590, gene.Thate09g07390, gene.Thate09g07950
Malvaceae Hibiscus hamabo Siebold & Zucc. 2 nbisL1-mrna-7468, nbisL1-mrna-794
Nitrariaceae Nitraria sibirica 3 evm.TU.LG01.24, evm.TU.LG07.888, evm.TU.LG10.720
Plantaginaceae Plantago ovata 3 Pov_00015237, Pov_00022145, Pov_00025792
Plumbaginaceae Limonium bicolor 4 Lb1G05140, Lb2G14900, Lb3G20071, Lb4G26300
Poaceae Echinochloa crus-galli 9 AH02.2233, AH06.2044, AH07.892, BH02.2336, BH06.1884 ...
BH07.1019, CH02.2509, CH06.2065, CH07.773
Poaceae Eleusine coracana subsp. coracana 6 gene-QOZ80_1AG0023420, gene-QOZ80_1BG0073940 ...
gene-QOZ80_2AG0137550, gene-QOZ80_2BG0193180, gene-QOZ80_6AG0543070, gene-QOZ80_6BG0496290
Poaceae Hordeum vulgare 3 HORVU.MOREX.r3.3HG0269870.1, HORVU.MOREX.r3.6HG0580090.2 ...
HORVU.MOREX.r3.7HG0717590.1
Poaceae Lolium multiflorum 3 gene-QYE76_021739, gene-QYE76_034512, gene-QYE76_053613
Poaceae Oryza coarctata 7 Oco01G013920, Oco02G014170, Oco03G005890, Oco04G006120 ...
Oco04G016030, Oco11G011280, Oco12G011400
Poaceae Oryza sativa 3 LOC_Os01g41630.1, LOC_Os02g13110.2, LOC_Os06g36770.1
Poaceae Paspalum vaginatum 3 gene-BS78_03G184700, gene-BS78_04G198300 ...
gene-BS78_10G168300
Poaceae Puccinellia tenuiflora 5 Pt_Chr0400470, Pt_Chr0400486, Pt_Chr0603201, Pt_Chr0603229 ...
Pt_Chr0605368
Poaceae Sporobolus alterniflorus 8 Chr02G016220, Chr02G029070, Chr03G010390, Chr05G006690 ...
Chr05G017690, Chr08G010610, Chr10G016550, Chr11G005850
Poaceae Thinopyrum elongatum 3 Tel3E01G370800, Tel6E01G369600, Tel7E01G622500
Poaceae Triticum dicoccoides 6 gene_TRIDC3AG032040, gene_TRIDC3BG036680 ...
gene_TRIDC6AG027410, gene_TRIDC6BG033560, gene_TRIDC7AG050180, gene_TRIDC7BG043590
Poaceae Triticum aestivum 9 TraesCS3A02G214500.2, TraesCS3B02G245100.2 ...
TraesCS3D02G217100.1, TraesCS6A02G187800.4, TraesCS6B02G216800.3, TraesCS6D02G178300.6, TraesCS7A02G358700.1, TraesCS7B02G268700.1, TraesCS7D02G364000.2
Poaceae Zea mays 7 Zm00001eb161320_P002, Zm00001eb205080_P004 ...
Zm00001eb243780_P001, Zm00001eb247180_P001, Zm00001eb336600_P001, Zm00001eb357700_P001, Zm00001eb384150_P001
Poaceae Zoysia japonica 4 nbis-gene-10208, nbis-gene-29332, nbis-gene-29588 ...
nbis-gene-9474
Poaceae Zoysia macrostachya 3 Zma_g10605, Zma_g30709, Zma_g8167
Portulacaceae Portulaca oleracea 6 evm.TU.LG05.2332, evm.TU.LG07.1096, evm.TU.LG07.1615 ...
evm.TU.LG07.1616, evm.TU.LG15.1740, evm.TU.LG15.1745
Posidoniaceae Posidonia oceanica 3 gene.Posoc03g19380, gene.Posoc03g21650, gene.Posoc09g06070
Rhizophoraceae Bruguiera sexangula 3 evm.TU.Scaffold_10_RagTag.1347 ...
evm.TU.Scaffold_11_RagTag.1038, evm.TU.Scaffold_18_RagTag.648
Rhizophoraceae Carallia pectinifolia 3 nbisL1-mrna-14718, nbisL1-mrna-27761, nbisL1-mrna-7075
Rhizophoraceae Ceriops tagal 3 nbisL1-mrna-15516, nbisL1-mrna-5019, nbisL1-mrna-8075
Rhizophoraceae Ceriops zippeliana 3 nbisL1-mrna-12601, nbisL1-mrna-8030, nbisL1-mrna-8773
Rhizophoraceae Kandelia candel 3 evm.TU.utg000004l.67, evm.TU.utg000010l.123 ...
evm.TU.utg000023l.72
Rhizophoraceae Kandelia obovata 3 Maker00004088, Maker00008919, Maker00018738
Rhizophoraceae Rhizophora apiculata 3 nbisL1-mrna-16447, nbisL1-mrna-734, nbisL1-mrna-7404
Rhizophoraceae Rhizophora mangle 3 nbisL1-mrna-17923, nbisL1-mrna-24322, nbisL1-mrna-8675
Salicaceae Populus euphratica 6 populus_peu02604, populus_peu04981, populus_peu12674 ...
populus_peu28666, populus_peu33506, populus_peu33509
Solanaceae Lycium barbarum 4 gene-LOC132601443, gene-LOC132603710, gene-LOC132633450 ...
gene-LOC132645676
Solanaceae Solanum chilense 4 SOLCI003840200, SOLCI004096800, SOLCI005557600 ...
SOLCI007425100
Solanaceae Solanum pennellii 4 gene-LOC107007484, gene-LOC107015339, gene-LOC107021207 ...
gene-LOC107023835
Tamaricaceae Reaumuria soongarica 3 gene_10029, gene_3154, gene_3739
Tamaricaceae Tamarix chinensis 3 TC01G2513, TC08G1710, TC10G2106
Zosteraceae Zostera marina 4 Zosma05g12250.v3.1, Zosma05g25390.v3.1, Zosma06g00630.v3.1 ...
Zosma06g11380.v3.1
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