HalophFGD

  • Home
  • Species
  • Search
  • Tools
    • Blast
    • GO enrichment
    • KEGG enrichment
    • Genome browser
    • Sequence extract
    • Network
    • Motif Enrichment
    • Motif Scan
    • Primer Design
  • Download
  • Manual
  • Contact
Basic Information
Locus ID: Zma_g8115
Species & Taxonomic ID: Zoysia macrostachya & 121788
Genome Assembly: GCA_049640385.1
Description:
Maps and Mapping Data
Chromosome Start End Strand ID
Zma_chr05 12112771 12113178 + Zma_g8115
Protein Data
Protein Properties:
Theoretical pI Molecular Weight Instability Index Aliphatic Index GRAVY
5.12 15,052.94 Da 35.82 92.37 -0.11
Protein Domain:
Category ID Description Start End Evalue/Score InterPro ID
Pfam PF12937 F-box-like 7 42 1.9E-5 IPR001810
SUPERFAMILY SSF81383 F-box domain 4 42 1.31E-7 IPR036047
Gene3D G3DSA:1.20.1280.50 - 6 45 1.4E-6 -
SMART SM00256 fbox_2 10 51 3.7E-4 IPR001810
Gene Ontology
Molecular Function:
GO:0005515 (protein binding)
Best hit
Source Best Hit ID Description E-value
RefSeq XP_013462241.1 F-box protein SKIP23 [Medicago truncatula] 0
TrEMBL A0A2T8ILD6 DUF295 domain-containing protein OS=Panicum hallii OX=206008 GN=PAHAL_5G269000 PE=4 SV=1 0
Expression
First Prev Next Last
BioProject Accession TPM Cultivar Tissue Development Stage Sample Name Description
No sample metadata found.
Network

No network data available for this species.

Orthology
Family Species Count Orthologous Genes
Apiaceae Apium graveolens 1 Ag9G01941
Poaceae Echinochloa crus-galli 9 AH02.2129, AH02.2130, AH02.2131, BH02.2201, BH02.2202 ...
BH02.2203, CH02.2353, CH02.2354, CH02.2355
Poaceae Eleusine coracana subsp. coracana 4 gene-QOZ80_1AG0022000, gene-QOZ80_1BG0071930 ...
gene-QOZ80_1BG0071940, gene-QOZ80_1BG0071960
Poaceae Oryza coarctata 2 Oco01G011700, Oco02G011950
Poaceae Oryza sativa 3 LOC_Os01g34220.1, LOC_Os01g34270.1, LOC_Os10g07430.1
Poaceae Paspalum vaginatum 1 gene-BS78_03G174000
Poaceae Sporobolus alterniflorus 5 Chr02G017010, Chr02G017020, Chr03G009610, Chr05G016520 ...
Chr08G009980
Poaceae Zoysia japonica 5 nbis-gene-29409, nbis-gene-29411, nbis-gene-29412 ...
nbis-gene-54851, nbis-gene-54852
Poaceae Zoysia macrostachya 2 Zma_g8115, Zma_g8116
Maintained by Hengyu Yan - College of Agronomy - Qingdao Agricultural University © 2024 All Rights Reserved.