Basic Information
Locus ID:
Zma_g8
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
LisH
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 67175 | 72332 | - | Zma_g8 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.00 | 77,090.54 Da | 38.12 | 70.93 | -0.47 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00200 | WD40 | 427 | 707 | 8.30344E-50 | - |
| Pfam | PF00400 | WD domain, G-beta repeat | 589 | 624 | 3.4E-4 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 466 | 497 | 1.3E-5 | IPR001680 |
| Pfam | PF08513 | LisH | 10 | 35 | 2.3E-6 | IPR006594 |
| Pfam | PF00400 | WD domain, G-beta repeat | 428 | 455 | 0.016 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 505 | 540 | 5.0E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 428 | 707 | 3.05E-57 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 547 | 707 | 3.3E-27 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 386 | 546 | 3.5E-30 | IPR015943 |
| SMART | SM00667 | Lish | 8 | 40 | 0.0017 | IPR006594 |
| SMART | SM00320 | WD40_4 | 501 | 541 | 4.5E-6 | IPR001680 |
| SMART | SM00320 | WD40_4 | 587 | 625 | 3.2E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 458 | 497 | 5.1E-7 | IPR001680 |
| SMART | SM00320 | WD40_4 | 628 | 667 | 1.5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 669 | 707 | 0.073 | IPR001680 |
| SMART | SM00320 | WD40_4 | 416 | 455 | 0.0023 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 423 | 464 | 8.703868 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 465 | 497 | 11.523771 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 508 | 542 | 8.623787 | - |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 676 | 707 | 10.047417 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 508 | 542 | 10.241105 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 465 | 506 | 13.950525 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 8 | 40 | 9.394368 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 676 | 707 | 10.374778 | IPR001680 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 305 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 289 | 336 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 269 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 249 | 272 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 140 | 167 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G32700.6 | LEUNIG_homolog. Encodes a WD40 repeat and LUFS domain containing protein that is similar to LUG. Interacts physically with SEUSS and likely functions as part of a repressor complex that represses AG. | 0 |
| RefSeq | XP_025794282.1 | transcriptional corepressor LEUNIG_HOMOLOG-like isoform X1 [Panicum hallii] | 0 |
| O48847 | Transcriptional corepressor LEUNIG_HOMOLOG OS=Arabidopsis thaliana OX=3702 GN=LUH PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W8K7 | LisH domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_03701 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology