Basic Information
Locus ID:
Zma_g7919
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Glycosyl hydrolases family 28
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 6755423 | 6758088 | + | Zma_g7919 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.58 | 76,707.74 Da | 66.79 | 70.56 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00295 | Glycosyl hydrolases family 28 | 359 | 681 | 1.0E-85 | IPR000743 |
| SUPERFAMILY | SSF51126 | Pectin lyase-like | 323 | 720 | 4.94E-117 | IPR011050 |
| Gene3D | G3DSA:2.160.20.10 | - | 317 | 718 | 4.0E-109 | IPR012334 |
| SMART | SM00710 | pbh1 | 519 | 540 | 140.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 601 | 622 | 1700.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 469 | 518 | 330.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 542 | 562 | 1100.0 | IPR006626 |
| SMART | SM00710 | pbh1 | 572 | 593 | 0.92 | IPR006626 |
| ProSitePatterns | PS00502 | Polygalacturonase active site. | 549 | 562 | - | IPR000743 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 145 | 167 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 183 | 256 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 111 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 87 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 298 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 271 | 298 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48100.1 | Pectin lyase-like superfamily protein. | 0 |
| RefSeq | XP_025818759.1 | polygalacturonase At1g48100-like isoform X1 [Panicum hallii] | 0 |
| Q949Z1 | Polygalacturonase At1g48100 OS=Arabidopsis thaliana OX=3702 GN=At1g48100 PE=2 SV=1 | 0 | |
| TrEMBL | A0A811P013 | Polygalacturonase OS=Miscanthus lutarioriparius OX=422564 GN=NCGR_LOCUS21561 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology