Basic Information
Locus ID:
Zma_g7881
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr05 | 6107787 | 6108542 | + | Zma_g7881 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.47 | 25,838.15 Da | 51.24 | 79.92 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 147 | 190 | 2.29504E-17 | - |
| Pfam | PF13639 | Ring finger domain | 147 | 190 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 142 | 196 | 1.32E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 145 | 195 | 9.1E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 148 | 189 | 3.4E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 144 | 198 | 0.0048 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 148 | 190 | 12.622055 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62690.1 | AtL5. Encodes a RING-H2 zinc finger protein related to ATL2. The ATL gene family is represented by fifteen sequences that contain, in addition to the RING, a transmembrane domain which is located in most of them towards the N-terminal end. | 0 |
| RefSeq | XP_039810715.1 | E3 ubiquitin-protein ligase ATL41-like [Panicum virgatum] | 0 |
| Q9LZJ6 | RING-H2 finger protein ATL5 OS=Arabidopsis thaliana OX=3702 GN=ATL5 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9UBS9 | RING-type E3 ubiquitin transferase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_30833 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | AH02.1452, BH02.1524 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_1AG0014460 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.3HG0233030.1.CDS1 ... |
| Poaceae | Oryza coarctata | 1 | Oco02G009280 |
| Poaceae | Oryza sativa | 1 | LOC_Os01g20910.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_03G134700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr02G021900, Chr08G007690 |
| Poaceae | Thinopyrum elongatum | 2 | Tel3E01G156100, Tel6E01G148600 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC3AG010650, gene_TRIDC3BG014430 |
| Poaceae | Triticum aestivum | 6 | TraesCS3A02G087900.1.cds1, TraesCS3B02G103300.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb130410_P001, Zm00001eb340160_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-48940, nbis-gene-6548 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g10213, Zma_g7881 |