Basic Information
Locus ID:
Zma_g7070
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 finger protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr04 | 13553292 | 13560357 | - | Zma_g7070 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.87 | 15,198.26 Da | 48.07 | 84.49 | 0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 93 | 136 | 7.14973E-17 | - |
| Pfam | PF13639 | Ring finger domain | 93 | 136 | 5.3E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 86 | 141 | 2.08E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 77 | 144 | 2.7E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 94 | 135 | 9.3E-8 | IPR001841 |
| SMART | SM01197 | FANCL_C_2 | 90 | 144 | 0.0045 | - |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 94 | 136 | 12.725326 | IPR001841 |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G20823.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052163204.1 | RING-H2 finger protein ATL32-like [Oryza glaberrima] | 0 |
| Q9LM69 | RING-H2 finger protein ATL80 OS=Arabidopsis thaliana OX=3702 GN=ATL80 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3GUX9 | RING-type E3 ubiquitin transferase OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-4645 |
| Poaceae | Echinochloa crus-galli | 2 | BH01.4054, CH01.4319 |
| Poaceae | Eleusine coracana subsp. coracana | 3 | gene-QOZ80_3AG0247630, gene-QOZ80_7AG0581660 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0112830.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_018681, gene-QYE76_038791, gene-QYE76_068013 |
| Poaceae | Oryza sativa | 1 | LOC_Os11g02260.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr12G019650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G235300 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G109000.1.cds1, TraesCS2B02G126700.1.cds1 ... |
| Poaceae | Zea mays | 2 | Zm00001eb016280_P001, Zm00001eb111410_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-103, nbis-gene-1626 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g1237, Zma_g7070 |