Basic Information
Locus ID:
Zma_g6862
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr04 | 12361719 | 12362474 | - | Zma_g6862 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 26,231.62 Da | 55.47 | 70.96 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 101 | 144 | 3.5401E-17 | - |
| Pfam | PF13639 | Ring finger domain | 101 | 144 | 3.1E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 97 | 155 | 4.24E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 97 | 148 | 2.2E-17 | IPR013083 |
| SMART | SM00184 | ring_2 | 102 | 143 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 102 | 144 | 12.430266 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 184 | 251 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 186 | 208 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53820.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039796763.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| Q9LRB7 | E3 ubiquitin-protein ligase EL5 OS=Oryza sativa subsp. japonica OX=39947 GN=EL5.1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0W4K2 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG591300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology