Basic Information
Locus ID:
Zma_g659
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr01 | 3958159 | 3961238 | - | Zma_g659 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.66 | 56,327.93 Da | 51.84 | 63.89 | -0.66 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 289 | 317 | 1.4E-6 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 363 | 389 | 2.6E-4 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 330 | 356 | 4.0E-6 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 325 | 358 | 2.86E-7 | IPR036443 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 281 | 318 | 3.77E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 280 | 319 | 4.7E-13 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 358 | 391 | 1.3E-8 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 320 | 357 | 3.8E-14 | - |
| SMART | SM00547 | zf_4 | 330 | 354 | 8.6E-8 | IPR001876 |
| SMART | SM00547 | zf_4 | 363 | 387 | 1.8E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 291 | 315 | 1.4E-5 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 328 | 357 | 10.217952 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 361 | 390 | 9.461374 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 289 | 318 | 9.653342 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 293 | 312 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 365 | 384 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 332 | 351 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 462 | 506 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 423 | 506 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G48570.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_040378128.1 | zinc finger protein VAR3, chloroplastic-like [Oryza brachyantha] | 0 |
| TrEMBL | A0A5J9WC36 | Zinc finger protein VAR3, chloroplastic OS=Eragrostis curvula OX=38414 GN=EJB05_04931 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology