Basic Information
Locus ID:
Zma_g6025
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr04 | 1589557 | 1600647 | - | Zma_g6025 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 131,847.58 Da | 42.30 | 77.32 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 62 | 185 | 7.54902E-38 | IPR002083 |
| CDD | cd02659 | peptidase_C19C | 203 | 531 | 1.6168E-164 | - |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 630 | 884 | 5.7E-74 | IPR024729 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 205 | 526 | 7.9E-47 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 894 | 1102 | 2.1E-55 | IPR029346 |
| Pfam | PF00917 | MATH domain | 67 | 187 | 4.3E-19 | IPR002083 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 200 | 557 | 1.47E-96 | IPR038765 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 62 | 195 | 1.29E-39 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 810 | 907 | 4.2E-27 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 60 | 201 | 1.1E-50 | IPR008974 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 202 | 530 | 1.6E-88 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 692 | 808 | 6.3E-42 | - |
| SMART | SM00061 | math_3 | 62 | 166 | 9.3E-21 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 205 | 529 | 39.702717 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 60 | 185 | 36.550865 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 445 | 462 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 206 | 221 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1102 | 1124 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 31 | 50 | - | - |
| Coils | Coil | Coil | 542 | 569 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G11910.1 | ubiquitin-specific protease 13. | 0 |
| RefSeq | XP_025800316.1 | ubiquitin carboxyl-terminal hydrolase 12-like isoform X1 [Panicum hallii] | 0 |
| Q84WU2 | Ubiquitin C-terminal hydrolase 13 OS=Arabidopsis thaliana OX=3702 GN=UBP13 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9W0S6 | ubiquitinyl hydrolase 1 (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_15031 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology