Basic Information
Locus ID:
Zma_g5911
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Polysaccharide lyase family 4, domain III
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr04 | 602297 | 605728 | + | Zma_g5911 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.20 | 75,544.38 Da | 39.01 | 75.52 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd10316 | RGL4_M | 381 | 482 | 5.09282E-29 | IPR029413 |
| CDD | cd10320 | RGL4_N | 50 | 338 | 6.88973E-62 | - |
| CDD | cd10317 | RGL4_C | 494 | 682 | 1.7724E-47 | - |
| Pfam | PF14686 | Polysaccharide lyase family 4, domain II | 410 | 478 | 6.3E-20 | IPR029413 |
| Pfam | PF06045 | Rhamnogalacturonate lyase family | 41 | 242 | 2.1E-66 | IPR010325 |
| Pfam | PF14683 | Polysaccharide lyase family 4, domain III | 492 | 681 | 2.5E-45 | IPR029411 |
| SUPERFAMILY | SSF74650 | Galactose mutarotase-like | 51 | 304 | 2.67E-5 | IPR011013 |
| SUPERFAMILY | SSF49452 | Starch-binding domain-like | 426 | 480 | 8.24E-8 | IPR013784 |
| SUPERFAMILY | SSF49785 | Galactose-binding domain-like | 490 | 682 | 1.62E-36 | IPR008979 |
| Gene3D | G3DSA:2.70.98.10 | - | 45 | 337 | 4.9E-12 | IPR014718 |
| Gene3D | G3DSA:2.60.40.1120 | - | 378 | 480 | 1.7E-7 | - |
| Gene3D | G3DSA:2.60.120.260 | - | 488 | 682 | 4.6E-13 | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09880.4 | - | 0 |
| RefSeq | XP_004960971.1 | probable rhamnogalacturonate lyase B [Setaria italica] | 0 |
| TrEMBL | A0A5J9SJ75 | rhamnogalacturonan endolyase (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_55661 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology