Basic Information
Locus ID:
Zma_g5564
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-H2 zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr03 | 11208827 | 11209531 | - | Zma_g5564 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 24,093.17 Da | 51.11 | 79.40 | 0.14 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16454 | RING-H2_PA-TM-RING | 90 | 133 | 6.94733E-16 | - |
| Pfam | PF13639 | Ring finger domain | 90 | 133 | 1.7E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 87 | 137 | 1.88E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 69 | 140 | 3.6E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 91 | 132 | 6.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 91 | 133 | 12.681067 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 197 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 191 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_039796763.1 | E3 ubiquitin-protein ligase EL5-like [Panicum virgatum] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A8T0W4K2 | RING-type domain-containing protein OS=Panicum virgatum OX=38727 GN=PVAP13_2NG591300 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology