Basic Information
Locus ID:
Zma_g5336
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
WRC
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr03 | 9675409 | 9679870 | + | Zma_g5336 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.95 | 74,066.44 Da | 63.39 | 48.90 | -1.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF08879 | WRC | 294 | 331 | 2.8E-14 | IPR014977 |
| ProSiteProfiles | PS51667 | WRC domain profile. | 293 | 337 | 19.831402 | IPR014977 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 435 | 481 | 9.582937 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 202 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 305 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 645 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 175 | 201 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 104 | 154 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 94 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 673 | 688 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 347 | 369 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 49 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 50 | 69 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 278 | 305 | - | - |
| Coils | Coil | Coil | 112 | 132 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G09060.1 | Zinc finger, RING-type;Transcription factor jumonji/aspartyl beta-hydroxylase. | 0 |
| RefSeq | XP_039830152.1 | uncharacterized protein LOC120691199 isoform X1 [Panicum virgatum] | 0 |
| F4HZD1 | E3 ubiquitin-protein ligase JMJ24 OS=Arabidopsis thaliana OX=3702 GN=JMJ24 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9VSR3 | Lysine-specific demethylase JMJ25 OS=Eragrostis curvula OX=38414 GN=EJB05_11815 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Arecaceae | Cocos nucifera | 2 | COCNU_06G010020, COCNU_14G006700 |
| Arecaceae | Phoenix dactylifera | 2 | gene-LOC103714750, gene-LOC103724011 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_03.868.V1.1 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno13g00140 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate05g28940 |
| Poaceae | Echinochloa crus-galli | 6 | AH03.3344, AH03.3939, BH03.3531, BH03.4231, CH03.3740 ... |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0572320, gene-QOZ80_7BG0603800 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0135860.1 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_040264 |
| Poaceae | Oryza coarctata | 2 | Oco13G009860, Oco14G010510 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g37140.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G312900 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0304293, Pt_Chr0304340 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G004580, Chr24G009860, Chr27G012740, Chr28G009210 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G388900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG026830, gene_TRIDC2BG031270 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G207000.1, TraesCS2B02G234100.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb106740_P001, Zm00001eb323940_P001 ... |
| Poaceae | Zoysia japonica | 3 | nbis-gene-10645, nbis-gene-56244, nbis-gene-726 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5336, Zma_g6641 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc10g00430 |
| Salicaceae | Populus euphratica | 1 | populus_peu18286 |
| Zosteraceae | Zostera marina | 1 | Zosma05g20610.v3.1 |