Basic Information
Locus ID:
Zma_g4053
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
U-box domain-containing protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr02 | 16413013 | 16414347 | + | Zma_g4053 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 47,231.17 Da | 36.85 | 104.91 | 0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 31 | 72 | 1.1808E-22 | - |
| Pfam | PF04564 | U-box domain | 27 | 98 | 1.1E-21 | IPR003613 |
| SUPERFAMILY | SSF48371 | ARM repeat | 188 | 422 | 9.36E-17 | IPR016024 |
| SUPERFAMILY | SSF57850 | RING/U-box | 22 | 101 | 8.83E-30 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 26 | 99 | 2.6E-30 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 134 | 422 | 1.0E-14 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 30 | 93 | 4.0E-32 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 26 | 100 | 38.940536 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_025796237.1 | U-box domain-containing protein 21-like [Panicum hallii] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A3L6TJU2 | RING-type E3 ubiquitin transferase OS=Panicum miliaceum OX=4540 GN=C2845_PM01G08820 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology