Basic Information
Locus ID:
Zma_g4003
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
C-terminal to LisH motif.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr02 | 16018004 | 16024865 | + | Zma_g4003 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.68 | 125,180.67 Da | 41.02 | 80.16 | -0.32 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 917 | 950 | 0.0033 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 453 | 486 | 9.3E-4 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 340 | 662 | 1.08E-38 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 837 | 1095 | 2.93E-33 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 818 | 1104 | 1.0E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 318 | 541 | 1.6E-28 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 542 | 690 | 8.1E-10 | IPR015943 |
| SMART | SM00320 | WD40_4 | 828 | 865 | 36.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 446 | 487 | 1.6E-4 | IPR001680 |
| SMART | SM00320 | WD40_4 | 580 | 620 | 6.7 | IPR001680 |
| SMART | SM00667 | Lish | 4 | 36 | 5.2E-5 | IPR006594 |
| SMART | SM00320 | WD40_4 | 868 | 908 | 5.0 | IPR001680 |
| SMART | SM00668 | ctlh | 34 | 92 | 2.4E-14 | IPR006595 |
| SMART | SM00320 | WD40_4 | 400 | 440 | 8.3 | IPR001680 |
| SMART | SM00320 | WD40_4 | 340 | 379 | 21.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 911 | 950 | 1.9E-5 | IPR001680 |
| SMART | SM00320 | WD40_4 | 1001 | 1042 | 8.1 | IPR001680 |
| SMART | SM00320 | WD40_4 | 490 | 531 | 0.11 | IPR001680 |
| SMART | SM00320 | WD40_4 | 534 | 577 | 28.0 | IPR001680 |
| ProSiteProfiles | PS50897 | C-terminal to LisH (CTLH) motif profile. | 34 | 92 | 13.61202 | IPR006595 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 918 | 952 | 10.363778 | - |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 453 | 496 | 9.873505 | IPR001680 |
| ProSiteProfiles | PS50896 | LIS1 homology (LisH) motif profile. | 4 | 36 | 10.212169 | IPR006594 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 918 | 952 | 12.446706 | IPR001680 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 474 | 488 | - | IPR019775 |
| ProSitePatterns | PS00678 | Trp-Asp (WD) repeats signature. | 937 | 951 | - | IPR019775 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1096 | 1132 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1107 | 1132 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G80490.2 | TOPLESS-related 1. | 0 |
| RefSeq | XP_025792937.1 | protein TPR3 isoform X2 [Panicum hallii] | 0 |
| Q10NY2 | Protein TPR3 OS=Oryza sativa subsp. japonica OX=39947 GN=TPR3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J9WID1 | TOPLESS OS=Eragrostis curvula OX=38414 GN=EJB05_07303 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology