Basic Information
Locus ID:
Zma_g3633
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Belongs to the TUB family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr02 | 13281162 | 13282027 | + | Zma_g3633 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.74 | 18,160.82 Da | 58.83 | 75.43 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01167 | Tub family | 111 | 161 | 8.7E-12 | IPR000007 |
| Pfam | PF00646 | F-box domain | 47 | 91 | 3.3E-8 | IPR001810 |
| SUPERFAMILY | SSF54518 | Tubby C-terminal domain-like | 97 | 161 | 3.4E-11 | IPR025659 |
| SUPERFAMILY | SSF81383 | F-box domain | 37 | 90 | 7.98E-7 | IPR036047 |
| Gene3D | G3DSA:1.20.1280.50 | - | 41 | 94 | 4.4E-6 | - |
| Gene3D | G3DSA:3.20.90.10 | Tubby Protein; Chain A | 108 | 162 | 9.5E-9 | IPR025659 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 44 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47900.3 | tubby like protein 3. Member of TLP family | 0 |
| RefSeq | XP_021307695.1 | tubby-like F-box protein 6 [Sorghum bicolor] | 0 |
| Q10LG8 | Tubby-like F-box protein 6 OS=Oryza sativa subsp. japonica OX=39947 GN=TULP6 PE=2 SV=1 | 0 | |
| TrEMBL | A0A1B6QN76 | Tubby-like F-box protein OS=Sorghum bicolor OX=4558 GN=SORBI_3001G372000 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Apiaceae | Apium graveolens | 1 | Ag2G01022 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT1G61940.1 |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G0698 |
| Poaceae | Lolium multiflorum | 1 | gene-QYE76_002965 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0700123 |
| Poaceae | Zea mays | 2 | Zm00001eb109230_P001, Zm00001eb110940_P001 |
| Poaceae | Zoysia japonica | 3 | nbis-gene-155, nbis-gene-33195, nbis-gene-56612 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3633 |