Basic Information
Locus ID:
Zma_g33251
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 19555538 | 19558724 | + | Zma_g33251 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 53,480.81 Da | 57.07 | 80.41 | -0.42 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 242 | 290 | 6.67243E-17 | - |
| Pfam | PF12906 | RING-variant domain | 242 | 289 | 1.2E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 238 | 293 | 1.48E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 229 | 297 | 3.1E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 241 | 290 | 3.9E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 234 | 296 | 19.725155 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 139 | 170 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 21 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 485 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 43 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 464 | 478 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 87 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 447 | 463 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039844458.1 | uncharacterized protein LOC120704216 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9TB02 | 3-hydroxyisobutyrate dehydrogenase OS=Eragrostis curvula OX=38414 GN=EJB05_41954 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology