Basic Information
Locus ID:
Zma_g32642
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
PHD zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 15482494 | 15485071 | + | Zma_g32642 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.98 | 74,740.02 Da | 38.91 | 89.00 | -0.05 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15556 | PHD_MMD1_like | 610 | 655 | 4.78602E-24 | - |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 606 | 661 | 1.26E-12 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 600 | 664 | 4.8E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 610 | 656 | 2.3E-5 | IPR001965 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 611 | 655 | - | IPR019786 |
| ProSitePatterns | PS01306 | Uncharacterized protein family UPF0054 signature. | 156 | 166 | - | IPR020549 |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22260.1 | RING/FYVE/PHD zinc finger superfamily protein. Sporophytic factor controlling anther and pollen development. Mutants fail to make functional pollen;pollen degeneration occurs after microspore release and the tapetum also appears abnormally vacuolated. Similar to PHD-finger motif transcription factors. | 0 |
| RefSeq | NP_001352488.1 | PHD finger protein MALE STERILITY 1-like [Zea mays] | 0 |
| Q67V61 | PHD finger protein PERSISTENT TAPETAL CELL 1 OS=Oryza sativa subsp. japonica OX=39947 GN=PTC1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9TGJ5 | PHD domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_43256 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology