Basic Information
Locus ID:
Zma_g32440
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 13986449 | 13990181 | - | Zma_g32440 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.34 | 41,718.17 Da | 54.63 | 89.15 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.70848E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 153 | 191 | 7.7E-13 | IPR015940 |
| Pfam | PF00240 | Ubiquitin family | 4 | 76 | 2.9E-18 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 337 | 373 | 3.5E-11 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 253 | 308 | 6.2E-21 | IPR015360 |
| SUPERFAMILY | SSF46934 | UBA-like | 140 | 197 | 1.47E-9 | IPR009060 |
| SUPERFAMILY | SSF46934 | UBA-like | 319 | 388 | 1.34E-13 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 249 | 314 | 2.35E-20 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 1.82E-22 | IPR029071 |
| Gene3D | G3DSA:1.10.10.540 | - | 243 | 309 | 6.8E-24 | IPR036353 |
| Gene3D | G3DSA:1.10.8.10 | - | 330 | 377 | 3.8E-20 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 79 | 6.5E-25 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 146 | 196 | 6.5E-19 | - |
| SMART | SM00165 | uba_6 | 153 | 193 | 2.8E-4 | IPR015940 |
| SMART | SM00165 | uba_6 | 338 | 375 | 1.2E-8 | IPR015940 |
| SMART | SM00727 | CBM | 251 | 294 | 4.7E-5 | IPR006636 |
| SMART | SM00213 | ubq_7 | 1 | 75 | 5.6E-20 | IPR000626 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 380 | 6.2E-106 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 336 | 376 | 14.40237 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 20.39187 | IPR000626 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 154 | 194 | 11.799884 | IPR015940 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 332 | 348 | 3.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 349 | 363 | 3.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 364 | 379 | 3.4E-31 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 279 | 301 | 3.4E-31 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 205 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 229 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 110 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G38470.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_004956778.1 | probable ubiquitin receptor RAD23 [Setaria italica] | 0 |
| Q40742 | Probable ubiquitin receptor RAD23 OS=Oryza sativa subsp. japonica OX=39947 GN=RAD23 PE=1 SV=2 | 0 | |
| TrEMBL | A0A5J9TDQ9 | Ubiquitin receptor RAD23 OS=Eragrostis curvula OX=38414 GN=EJB05_42971 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology