Basic Information
Locus ID:
Zma_g32068
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Epidermal growth factor-like domain.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 10363436 | 10367517 | + | Zma_g32068 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.36 | 120,057.35 Da | 42.98 | 82.53 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00054 | EGF_CA | 318 | 352 | 7.44074E-6 | - |
| CDD | cd14066 | STKc_IRAK | 791 | 1044 | 3.40282E-85 | - |
| CDD | cd00054 | EGF_CA | 654 | 689 | 0.00123885 | - |
| Pfam | PF07645 | Calcium-binding EGF domain | 318 | 348 | 8.7E-6 | IPR001881 |
| Pfam | PF07645 | Calcium-binding EGF domain | 654 | 686 | 0.0031 | IPR001881 |
| Pfam | PF00069 | Protein kinase domain | 779 | 1044 | 4.0E-43 | IPR000719 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 32 | 92 | 1.7E-13 | IPR025287 |
| Pfam | PF13947 | Wall-associated receptor kinase galacturonan-binding | 387 | 449 | 1.8E-12 | IPR025287 |
| SUPERFAMILY | SSF57196 | EGF/Laminin | 317 | 352 | 5.22E-6 | - |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 762 | 1050 | 3.83E-74 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 854 | 1076 | 5.7E-54 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 738 | 853 | 6.0E-31 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 271 | 359 | 6.4E-12 | - |
| Gene3D | G3DSA:2.10.25.10 | Laminin | 617 | 692 | 2.3E-11 | - |
| SMART | SM00220 | serkin_6 | 778 | 1051 | 9.4E-32 | IPR000719 |
| SMART | SM00181 | egf_5 | 321 | 360 | 5.5 | IPR000742 |
| SMART | SM00179 | egfca_6 | 654 | 697 | 7.6E-4 | IPR001881 |
| SMART | SM00179 | egfca_6 | 318 | 360 | 6.6E-6 | IPR001881 |
| SMART | SM00181 | egf_5 | 275 | 317 | 4.3 | IPR000742 |
| SMART | SM00181 | egf_5 | 657 | 697 | 62.0 | IPR000742 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 778 | 1051 | 35.891186 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 899 | 911 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 784 | 807 | - | IPR017441 |
| ProSitePatterns | PS00010 | Aspartic acid and asparagine hydroxylation site. | 334 | 345 | - | IPR000152 |
| ProSitePatterns | PS01187 | Calcium-binding EGF-like domain signature. | 318 | 343 | - | IPR018097 |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G21210.1 | wall associated kinase 4. cell wall-associated ser/thr kinase involved in cell elongation and lateral root development | 0 |
| RefSeq | XP_034607146.1 | wall-associated receptor kinase 2-like isoform X1 [Setaria viridis] | 0 |
| Q9LMN6 | Wall-associated receptor kinase 4 OS=Arabidopsis thaliana OX=3702 GN=WAK4 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9W684 | Protein kinase domain-containing protein (Fragment) OS=Eragrostis curvula OX=38414 GN=EJB05_09941 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 4 | gene-QOZ80_6AG0525960, gene-QOZ80_6AG0525980 ... |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.5HG0525250.1 |
| Poaceae | Sporobolus alterniflorus | 1 | Chr14G008760 |
| Poaceae | Triticum dicoccoides | 1 | gene_TRIDC7AG078570 |
| Poaceae | Zoysia japonica | 5 | nbis-gene-31881, nbis-gene-31882, nbis-gene-50705 ... |
| Poaceae | Zoysia macrostachya | 3 | Zma_g29880, Zma_g32067, Zma_g32068 |