Basic Information
Locus ID:
Zma_g31679
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-type E3 ubiquitin transferase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 3130637 | 3131989 | + | Zma_g31679 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 46,608.11 Da | 37.64 | 99.93 | 0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16664 | RING-Ubox_PUB | 42 | 83 | 2.85459E-22 | - |
| Pfam | PF04564 | U-box domain | 38 | 109 | 1.4E-17 | IPR003613 |
| SUPERFAMILY | SSF57850 | RING/U-box | 34 | 113 | 7.07E-27 | - |
| SUPERFAMILY | SSF48371 | ARM repeat | 211 | 432 | 2.03E-16 | IPR016024 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 23 | 113 | 1.2E-26 | IPR013083 |
| Gene3D | G3DSA:1.25.10.10 | - | 114 | 442 | 4.0E-16 | IPR011989 |
| SMART | SM00504 | Ubox_2 | 41 | 104 | 4.2E-27 | IPR003613 |
| ProSiteProfiles | PS51698 | U-box domain profile. | 37 | 111 | 33.571198 | IPR003613 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G37490.1 | ARM repeat superfamily protein. | 0 |
| RefSeq | XP_034589630.1 | U-box domain-containing protein 21-like [Setaria viridis] | 0 |
| Q5PNY6 | U-box domain-containing protein 21 OS=Arabidopsis thaliana OX=3702 GN=PUB21 PE=2 SV=1 | 0 | |
| TrEMBL | A0A4U6UYQ0 | RING-type E3 ubiquitin transferase OS=Setaria viridis OX=4556 GN=SEVIR_4G109100v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology