Basic Information
Locus ID:
Zma_g31466
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
Protein DA1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr20 | 1580132 | 1585180 | + | Zma_g31466 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.53 | 57,155.01 Da | 53.10 | 64.38 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd09396 | LIM_DA1 | 138 | 190 | 6.16389E-26 | - |
| Pfam | PF12315 | Protein DA1 | 288 | 495 | 1.4E-100 | IPR022087 |
| Pfam | PF00412 | LIM domain | 138 | 193 | 1.4E-7 | IPR001781 |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 133 | 163 | 1.06E-6 | - |
| SUPERFAMILY | SSF57716 | Glucocorticoid receptor-like (DNA-binding domain) | 165 | 219 | 7.21E-8 | - |
| Gene3D | G3DSA:2.10.110.10 | Cysteine Rich Protein | 134 | 211 | 2.7E-13 | - |
| SMART | SM00726 | uim | 78 | 97 | 110.0 | IPR003903 |
| SMART | SM00726 | uim | 47 | 66 | 0.57 | IPR003903 |
| SMART | SM00132 | lim_4 | 137 | 189 | 8.1E-11 | IPR001781 |
| ProSiteProfiles | PS50330 | Ubiquitin-interacting motif (UIM) domain profile. | 50 | 66 | 8.670219 | IPR003903 |
| ProSiteProfiles | PS50023 | LIM domain profile. | 136 | 196 | 12.1078 | IPR001781 |
| ProSitePatterns | PS00478 | LIM zinc-binding domain signature. | 138 | 172 | - | IPR001781 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 89 | 109 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G36860.1 | LIM domain-containing protein. | 0 |
| RefSeq | XP_021305840.1 | protein DA1 [Sorghum bicolor] | 0 |
| Q8W4F0 | Protein DA1-related 1 OS=Arabidopsis thaliana OX=3702 GN=DAR1 PE=1 SV=3 | 0 | |
| TrEMBL | C5Z5H9 | LIM zinc-binding domain-containing protein OS=Sorghum bicolor OX=4558 GN=SORBI_3010G064600 PE=4 SV=2 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology