Basic Information
Locus ID:
Zma_g30996
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr19 | 19957207 | 19960520 | + | Zma_g30996 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 53,228.46 Da | 55.94 | 80.49 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 243 | 291 | 1.99891E-16 | - |
| Pfam | PF12906 | RING-variant domain | 243 | 290 | 9.7E-12 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 239 | 294 | 1.41E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 230 | 298 | 2.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 242 | 291 | 8.1E-19 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 235 | 297 | 19.539845 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 92 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 189 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 137 | 177 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 56 | 98 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 456 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 448 | 486 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_039804070.1 | uncharacterized protein LOC120668433 isoform X1 [Panicum virgatum] | 0 |
| TrEMBL | A0A5J9TB02 | 3-hydroxyisobutyrate dehydrogenase OS=Eragrostis curvula OX=38414 GN=EJB05_41954 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology