Basic Information
Locus ID:
Zma_g29469
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
XPC-binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr19 | 3618939 | 3627324 | + | Zma_g29469 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.59 | 43,786.28 Da | 47.21 | 80.99 | -0.22 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd01805 | Ubl_Rad23 | 1 | 74 | 3.08303E-21 | - |
| CDD | cd14379 | UBA1_Rad23_plant | 160 | 209 | 1.20513E-30 | - |
| Pfam | PF00627 | UBA/TS-N domain | 166 | 204 | 1.0E-14 | IPR015940 |
| Pfam | PF09280 | XPC-binding domain | 295 | 348 | 4.5E-18 | IPR015360 |
| Pfam | PF00240 | Ubiquitin family | 3 | 76 | 3.4E-17 | IPR000626 |
| Pfam | PF00627 | UBA/TS-N domain | 376 | 411 | 7.1E-10 | IPR015940 |
| SUPERFAMILY | SSF46934 | UBA-like | 360 | 417 | 7.77E-14 | IPR009060 |
| SUPERFAMILY | SSF101238 | XPC-binding domain | 291 | 351 | 1.29E-17 | IPR036353 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 1 | 91 | 2.3E-20 | IPR029071 |
| SUPERFAMILY | SSF46934 | UBA-like | 162 | 219 | 2.33E-12 | IPR009060 |
| Gene3D | G3DSA:1.10.8.10 | - | 368 | 414 | 2.0E-21 | - |
| Gene3D | G3DSA:1.10.10.540 | - | 283 | 350 | 1.4E-23 | IPR036353 |
| Gene3D | G3DSA:3.10.20.90 | - | 1 | 80 | 2.4E-24 | - |
| Gene3D | G3DSA:1.10.8.10 | - | 159 | 209 | 4.0E-21 | - |
| SMART | SM00213 | ubq_7 | 1 | 75 | 1.5E-18 | IPR000626 |
| SMART | SM00165 | uba_6 | 376 | 413 | 1.5E-8 | IPR015940 |
| SMART | SM00165 | uba_6 | 166 | 206 | 1.3E-5 | IPR015940 |
| SMART | SM00727 | CBM | 290 | 335 | 1.3E-7 | IPR006636 |
| TIGRFAM | TIGR00601 | rad23: UV excision repair protein Rad23 | 1 | 419 | 9.7E-106 | IPR004806 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 164 | 207 | 12.980641 | IPR015940 |
| ProSiteProfiles | PS50030 | Ubiquitin-associated domain (UBA) profile. | 373 | 414 | 14.040914 | IPR015940 |
| ProSiteProfiles | PS50053 | Ubiquitin domain profile. | 1 | 79 | 18.954695 | IPR000626 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 402 | 417 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 320 | 342 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 370 | 386 | 6.7E-32 | IPR004806 |
| PRINTS | PR01839 | DNA repair protein Rad23 signature | 387 | 401 | 6.7E-32 | IPR004806 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 219 | 242 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 221 | 237 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 148 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 80 | 97 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 126 | 148 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G02540.1 | Rad23 UV excision repair protein family. Encodes a member of the RADIATION SENSITIVE23 (RAD23) family: AT1G16190(RAD23A), AT1G79650(RAD23B), AT3G02540(RAD23C), AT5G38470(RAD23D). RAD23 proteins play an essential role in the cell cycle, morphology, and fertility of plants through their delivery of UPS (ubiquitin/26S proteasome system) substrates to the 26S proteasome. | 0 |
| RefSeq | XP_052159049.1 | ubiquitin receptor RAD23d-like isoform X1 [Oryza glaberrima] | 0 |
| Q84L31 | Ubiquitin receptor RAD23c OS=Arabidopsis thaliana OX=3702 GN=RAD23C PE=1 SV=2 | 0 | |
| TrEMBL | A0A0D3GF39 | Ubiquitin receptor RAD23 OS=Oryza barthii OX=65489 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology