Basic Information
Locus ID:
Zma_g29260
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr19 | 1890227 | 1891222 | + | Zma_g29260 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.25 | 34,585.23 Da | 62.36 | 78.49 | -0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 123 | 166 | 1.57553E-21 | - |
| Pfam | PF13639 | Ring finger domain | 123 | 166 | 1.4E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 123 | 171 | 3.28E-21 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 78 | 170 | 2.2E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 124 | 165 | 9.9E-8 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 124 | 166 | 12.54829 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 274 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 288 | 331 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 248 | 263 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72310.1 | RING/U-box superfamily protein. Encodes a putative RING-H2 zinc finger protein ATL3 (ATL3). | 0 |
| RefSeq | XP_004964598.1 | E3 ubiquitin-protein ligase EL5 [Setaria italica] | 0 |
| Q9XF63 | RING-H2 finger protein ATL3 OS=Arabidopsis thaliana OX=3702 GN=ATL3 PE=2 SV=1 | 0 | |
| TrEMBL | A0A368QQL9 | RING-type domain-containing protein OS=Setaria italica OX=4555 GN=SETIT_4G042500v2 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology