Basic Information
Locus ID:
Zma_g28718
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
PA domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr18 | 12355000 | 12357580 | + | Zma_g28718 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.29 | 54,538.19 Da | 66.27 | 74.78 | -0.08 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 237 | 279 | 5.73297E-22 | - |
| CDD | cd02123 | PA_C_RZF_like | 18 | 166 | 1.35132E-50 | IPR044744 |
| Pfam | PF02225 | PA domain | 64 | 145 | 5.0E-9 | IPR003137 |
| Pfam | PF13639 | Ring finger domain | 236 | 279 | 7.0E-12 | IPR001841 |
| SUPERFAMILY | SSF52025 | PA domain | 84 | 147 | 1.44E-6 | - |
| SUPERFAMILY | SSF57850 | RING/U-box | 217 | 288 | 4.62E-19 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 199 | 284 | 4.8E-19 | IPR013083 |
| Gene3D | G3DSA:3.50.30.30 | - | 29 | 160 | 2.0E-26 | - |
| SMART | SM00184 | ring_2 | 237 | 278 | 2.6E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 237 | 279 | 12.25323 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 311 | 330 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 451 | 479 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_025823053.1 | receptor homology region, transmembrane domain- and RING domain-containing protein 1-like isoform X2 [Panicum hallii] | 0 |
| Q10R93 | Receptor homology region, transmembrane domain- and RING domain-containing protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os03g0167500 PE=2 SV=1 | 0 | |
| TrEMBL | A0A5J9U0L6 | RING-type domain-containing protein OS=Eragrostis curvula OX=38414 GN=EJB05_40283 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology