Basic Information
Locus ID:
Zma_g27850
Species & Taxonomic ID:
Zoysia macrostachya & 121788
Genome Assembly:
GCA_049640385.1
Description:
RING-type zinc-finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| Zma_chr18 | 2300018 | 2300776 | - | Zma_g27850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.84 | 26,194.66 Da | 62.05 | 69.17 | -0.28 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16461 | RING-H2_EL5_like | 161 | 204 | 3.83791E-16 | - |
| Pfam | PF13639 | Ring finger domain | 161 | 204 | 3.2E-13 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 153 | 210 | 3.53E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 120 | 209 | 2.3E-22 | IPR013083 |
| SMART | SM00184 | ring_2 | 162 | 203 | 3.1E-7 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 162 | 204 | 12.076194 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 18 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 214 | 252 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 236 | 252 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G72200.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_025805760.1 | RING-H2 finger protein ATL40-like [Panicum hallii] | 0 |
| Q7XLY8 | E3 ubiquitin-protein ligase Os04g0590900 OS=Oryza sativa subsp. japonica OX=39947 GN=Os04g0590900 PE=2 SV=2 | 0 | |
| TrEMBL | A0A2T7E6U3 | RING-type domain-containing protein OS=Panicum hallii var. hallii OX=1504633 GN=GQ55_3G076700 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Network
No network data available for this species.
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH05.639, BH05.691, CH05.795 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0401660, gene-QOZ80_5BG0450220 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.1HG0031470.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_010423, gene-QYE76_010463, gene-QYE76_051207 ... |
| Poaceae | Oryza coarctata | 2 | Oco09G004480, Oco10G004290 |
| Poaceae | Oryza sativa | 2 | LOC_Os01g11490.1, LOC_Os05g11860.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_09G083400 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr12G025740, Chr18G004300, Chr22G012960 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G230700, Tel3E01G248200 |
| Poaceae | Triticum dicoccoides | 4 | gene_TRIDC1AG018190, gene_TRIDC1BG022260 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS1A02G126200.1.cds1, TraesCS1B02G145400.1.cds1 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-17972, nbis-gene-41783 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g27850 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000023l.13 |